Gene Information

Name : Sfri_2567 (Sfri_2567)
Accession : YP_751246.1
Strain : Shewanella frigidimarina NCIMB 400
Genome accession: NC_008345
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 3071340 - 3072089 bp
Length : 750 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO2927 ABC transporter, ATP-binding protein

DNA sequence : 
ATGTCTAATAATATCGATCGAAATACCAGTGCCATTACTGTAACTAACCTCAATAAAACTGTCGTGACCCAAGAGGGAGA
GTTGACTATCCTCAACGGCATTAATATAGAAGTCAAGCAAGGAGACAGTATCGCCATTTTGGGGCCATCAGGTTCAGGTA
AGTCGACACTATTGGGGTTACTTGCAGCATTAGATACTCCTACCTCTGGTGAGATAGTGTTAGATGGCGTGGCATTATCT
GGATTAAATGAAGAGCAAAAAGCAGCGCTTCGTAAGCAAAAAGTCAGTTTTATTTTTCAGTCATTTATGTTGGTTGATAC
CTTAACCGCGCTTGAAAACGTTATGCTACCCGCAGAGCTTGCTGGGGTGAAAGATGCCAAGCAGAAAGCCCAAACCATGC
TTAATCGCGTTGGTTTATCTCATCGATTAAATCATTTACCTAAACAATTATCGGGTGGTGAGCAGCAACGTGTGGCGATT
GCCAGAGCTTTTATTTGTGAACCCAAAGTGCTGTTTGCAGATGAACCAACAGGCAACTTAGACAGTGTAAATGGCGATAA
AATTGCTGATATGTTGTTTGCGTTAAACCAAGAAAGTGACACCACGTTGGTGTTAGTGACTCATGATTTGCATTTAGCAA
AACGTTGCGCACGCCAATTAGTGATGGAGAATGGTCATTTATCTGAACCATACGCAGATAATCTGAAGGCTGCCCATGTG
AGCGCGGAACATGCTGAGGAGGTTAACTAA

Protein sequence : 
MSNNIDRNTSAITVTNLNKTVVTQEGELTILNGINIEVKQGDSIAILGPSGSGKSTLLGLLAALDTPTSGEIVLDGVALS
GLNEEQKAALRKQKVSFIFQSFMLVDTLTALENVMLPAELAGVKDAKQKAQTMLNRVGLSHRLNHLPKQLSGGEQQRVAI
ARAFICEPKVLFADEPTGNLDSVNGDKIADMLFALNQESDTTLVLVTHDLHLAKRCARQLVMENGHLSEPYADNLKAAHV
SAEHAEEVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-22 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-22 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-22 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-22 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sfri_2567 YP_751246.1 ABC transporter NC_012469.1.7686878. Protein 9e-30 48
Sfri_2567 YP_751246.1 ABC transporter NC_008702.1.4606598. Protein 2e-25 43
Sfri_2567 YP_751246.1 ABC transporter CP001581.1.gene798.p Protein 3e-20 41