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Name : Sfri_0235 (Sfri_0235) Accession : YP_748936.1 Strain : Shewanella frigidimarina NCIMB 400 Genome accession: NC_008345 Putative virulence/resistance : Unknown Product : RNA-binding S1 domain-containing protein Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 259984 - 262356 bp Length : 2373 bp Strand : + Note : PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: son:SO4629 hypothetical protein DNA sequence : ATGCATAATATTGCCCAGATTATCGCTCAAGAACTTAATGTCCGTGAACAACAGGTCACAGCGACCATTGCGCTATTAGA TGATGGCGCCACCGTGCCGTTTATTGCGCGCTATCGTAAAGAAGCTACCGGTGGTTTAGATGACACTCAGTTGCGTAACT TGTTTTCTCGTTTAGGTTATTTACGTGAGTTACACGACCGCCGCCAAGTGGTGTTGTCGAGCATTGATGCGCAAGGAAAA TTAACCCCAGCGTTAACTCAAGCGATTAATGACGCCGACAGTAAAACCCGCCTTGAAGATTTATATCTGCCATTCAAACC AAAGCGTCGTACTAAGGGCCAAATAGCCATCGAAGCGGGTATTGAGCCGCTTGTAGATGCAGTGCTAGCCAATCGTCAAT TAGATATAGAAAGTAAAGCAACTGAGTTTATTAATCCTGATGCGGGTTTTGCCGACTCTAAAGCGGTACTAGATGGTGCG CGTTTTATTTTAATGGAGCGTTTTGCTGAAGATGCAGAGTTGCTGCGTAAAGTGCGCCAGCATTTATTACAGCAAGCTGT GCTTGAAAGCCGCATGGTAAAAGGTAAAGAAAAAGAAGGCGCTAAATTCCGCGACTACTTTGAACATAATGAGCTGATGA GTAAAATCCCATCTCACCGTGCTTTAGCCATGTTGCGCGGTCGTAACGAAGGCATGTTAAGCCTATCGATGAACGCCGAT CCCGATACTCAAGCGACAGAAGGCAGTTATTGTGAAGTGATTATTAGCGATCACTTTAAGTTAGAACTGACTAACTCTAG CGTTGATGAATGGTTGAAAACGGTTGTGACCTCGACTTGGCGCATTAAAGTTGCCTTGCAAATGGAAACAGAGTTTATCG CTAAGATGCGTGAAAGCGCGGAAGAAGAGGCCATTAGAGTGTTTGCCCGTAACCTGGGCGATTTATTAATGGCGGCTCCT GCTGGTGCTAAAGCAACTATGGGACTCGATCCTGGTATCCGTACTGGTGTGAAAGTCGCGATTGTTGATAACACCGGTAA GCTGGTGGCCCACACCACTATTTTCCCGCATGCGCCACAGAACTTATGGGACAAATCGATTCGTACCTTAAGTAATTTAG TGACCATGCATAAAGTTGAAATTATTGCGATTGGTAATGGTACTGGCTCGCGTGAGACCGACAAGCTAACTGGCGAGTTA ATCGCTGCCGTGAAAGAAACGCATCCGACGCTGACCAAAGTGATTGTGAGTGAAGCGGGCGCATCGGTATATTCGGCCTC TGAGTTTGCCGCTAATGAGTTTCCTAATCTTGATGTGTCAATTCGTGGTGCGGTATCAATTGCGCGTCGCTTACAAGATC CGCTGGCAGAGTTAGTAAAAATTGAACCCAAAGCAATTGGCGTAGGACAATATCAGCATGATGTAAGCCAAAGCCAGTTA TCGCAGTCGCTTGAGGCCGTCGTTGAAGACTGTGTTAACGCTGTAGGTGTTGATTTAAATATGGCATCAGCGCCGTTATT AGCTCAAGTTGCTGGCTTAACCAAAACCTTAGCTAAAAACGTGGTTGATTTTCGTGACGCTAATGGTCAATTTACCAATC GTAAGCAGTTATTGAGTGTGGCTCGTTTAGGGCCTAAAGCTTATGAGCAAGCTGCGGGTTTTTTACGTATCCGTAATGGT GATAATCCATTGGATTCATCATCTGTTCATCCAGAAGCTTACAGCCTAGTTGAGTCGATTGCTGGTGCTAAGCAATTGCC ATTAACTGAACTGATTGGTAATAGCGATTTGTTAAAACAGATTAATGCTGCCGATTTTGTTACCGACGCATTTGGTGTGC CGACCATTAATGATATTTTAGCCGAACTAGACAAACCAGGACGCGACCCGCGTGGTGAGTTTAAAACGGCTACGTTTAAA GACGGCATAGAAGAATTGAAGCACCTTAAAGTCGAGATGATTTTAGAAGGTGTAGTCACCAACGTGACCAACTTTGGTGC CTTTGTTGATGTGGGTGTGCATCAAGATGGTTTAGTGCATATTTCATCGTTAACCGACAAGTTTGTTAGTGACCCACATA CAGTGGTTAAAGCCGGTGATGTGGTTAAAGTGAAAGTGATGGAAGTGGATATTGAGCGTCGTCGTATTGCGTTAAGCATG CGTCTTGATGAAAAAATTGATACTGAAAAAGCAATCAGACAGTCGCAGGGTAAGCCACAAAACAGTTACCAGAAAAAGCC TGCTGCGGGTAAATTTTCAGTCAATACCAAGAGTTCTGGTCATAATAAACCAGCCAGTAAACCGGTTAAAGCACCACAAA ATGCGGCTATGGGTAATGCGTTTGCTGATGCCTTTGCCAAGATAAAAAAATAA Protein sequence : MHNIAQIIAQELNVREQQVTATIALLDDGATVPFIARYRKEATGGLDDTQLRNLFSRLGYLRELHDRRQVVLSSIDAQGK LTPALTQAINDADSKTRLEDLYLPFKPKRRTKGQIAIEAGIEPLVDAVLANRQLDIESKATEFINPDAGFADSKAVLDGA RFILMERFAEDAELLRKVRQHLLQQAVLESRMVKGKEKEGAKFRDYFEHNELMSKIPSHRALAMLRGRNEGMLSLSMNAD PDTQATEGSYCEVIISDHFKLELTNSSVDEWLKTVVTSTWRIKVALQMETEFIAKMRESAEEEAIRVFARNLGDLLMAAP AGAKATMGLDPGIRTGVKVAIVDNTGKLVAHTTIFPHAPQNLWDKSIRTLSNLVTMHKVEIIAIGNGTGSRETDKLTGEL IAAVKETHPTLTKVIVSEAGASVYSASEFAANEFPNLDVSIRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVSQSQL SQSLEAVVEDCVNAVGVDLNMASAPLLAQVAGLTKTLAKNVVDFRDANGQFTNRKQLLSVARLGPKAYEQAAGFLRIRNG DNPLDSSSVHPEAYSLVESIAGAKQLPLTELIGNSDLLKQINAADFVTDAFGVPTINDILAELDKPGRDPRGEFKTATFK DGIEELKHLKVEMILEGVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFVSDPHTVVKAGDVVKVKVMEVDIERRRIALSM RLDEKIDTEKAIRQSQGKPQNSYQKKPAAGKFSVNTKSSGHNKPASKPVKAPQNAAMGNAFADAFAKIKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 0.0 | 60 |
