Gene Information

Name : Sfri_1554 (Sfri_1554)
Accession : YP_750243.1
Strain : Shewanella frigidimarina NCIMB 400
Genome accession: NC_008345
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4584
EC number : -
Position : 1855982 - 1857541 bp
Length : 1560 bp
Strand : +
Note : PFAM: Integrase, catalytic region; KEGG: pha:PSHAa0416 transposase

DNA sequence :
ATGATGAGAATGACCATGCCAACGGCACCTATTTCAATGCGTAAACTCAAAGAAATTTTAAGACTAAAATACGGCTGTAA
ACTCAGTCATCGTCAGATAGCAAAAAGCTTATCTGTTTCACCCTCAATCGTGTCTAAATATGCCTGTAAATCAGCAGAGC
TAGACATTACTTGCTGGCCGCTTGATGAGAAGTGGGATGATAACTCTCTACAACAAGCGTTTTTCAAAACAAAGCCTCGT
TTAAAAGGCTTTACCATTCCTGACTGGTCGTTAGTTCAACAAGAGCTTCGGCCTAAAACCATGACGTTGTTGCTGCTTTG
GGAAGAATACAAAGAGCGGCACGCGGAAGGTTTTTACAGTTACACTCACTTCTGCCGTCAGTACAAGGCATGGCTTAAAT
GCCAAAAACCCTCGATGCGACAAAACCATAAAGCTGGTGAAAAACTGTTTGTGGATTACTGTGGCCCAACCATGAGTATT
GTTGATAGAAGTACAGGCGAATGCCGTACTGCACAAGTATTCGTCGCGGTCATGGGGGCATCAAATTATACCTATGCCGA
AGCGACTTACAGCCAGAAACTTGAAGATTGGGTGATGAGTCATGCCCGTTGTTTTGAGTTTCTTGGTGGTGTTCCTGAGC
AGATCATTCCTGACAACCTTAAAAGTGCCGTCACCAAACCCTGCCGATATGAGCCTGACTTAAACCCAACCTACCAACAA
CTAGCGACGCATTACGATACCGTCATTGTGCCTGCAAGACCCTATAAACCAAAGGATAAAGCCAAGGCTGAAGTGGGTGT
ACAAATTGTTGAACGTTGGATCATGGCACGTCTTCGTAATGAAACCTTTTTTAGCTTGCGTCAATTAAATCTAAAGATTC
AAGAATTACTCATCGATTTAAATCAGCGACAAATGAAAAAACATCCTGGCTCACGATTAAGTCAATTTGAAGCCATTGAT
AAACCAGCGTTAAAACCATTGCCCTTGCAGCCTTACAGCTACACCTTAGTGAAACAAGTGAGAGTACATATTGATTATCA
TATTGAGATTGAAAAGCACTATTACTCAGTGCCACATACCTTGATCAAGCAAAAACTTGAAGCACATGCCTCAGGAAAAT
TGGTGACACTCTACCATCAAGGCATACGAGTCGCTGTTCACCCCAGATCATACCGAGAAGGTGCGCATACAACACTTGAG
CTACATATGCCTATCGCTCACCAAAAACAACAGCAATGGACACCGCAGCGATTTGAGCGCTGGGCAAGTCAGTTTGGTAA
ATCAACCGAGCAGTTTGTTATGCAATTGATGCAAGCTAAAAAGCATCCAGAGCAAAGCTACCGTGCTTGTATGGGGTTAT
TAAGCCTAGGCAAGAAGTTTACAGACCAACGTCTTGAAGCCGCCTGTCATCGCGCATTAGCCACAGGTGTTACTCGCGTA
AAACAAGTGAAAACCATCTTAGAAAAAGGCTTGGATAAGCAACCCTTGCCACAAGCTCAGGGTGATTCGCTACAAGATAT
TGATCATAAAAATATCCGCGGCAATAACTATTACCATTAA

Protein sequence :
MMRMTMPTAPISMRKLKEILRLKYGCKLSHRQIAKSLSVSPSIVSKYACKSAELDITCWPLDEKWDDNSLQQAFFKTKPR
LKGFTIPDWSLVQQELRPKTMTLLLLWEEYKERHAEGFYSYTHFCRQYKAWLKCQKPSMRQNHKAGEKLFVDYCGPTMSI
VDRSTGECRTAQVFVAVMGASNYTYAEATYSQKLEDWVMSHARCFEFLGGVPEQIIPDNLKSAVTKPCRYEPDLNPTYQQ
LATHYDTVIVPARPYKPKDKAKAEVGVQIVERWIMARLRNETFFSLRQLNLKIQELLIDLNQRQMKKHPGSRLSQFEAID
KPALKPLPLQPYSYTLVKQVRVHIDYHIEIEKHYYSVPHTLIKQKLEAHASGKLVTLYHQGIRVAVHPRSYREGAHTTLE
LHMPIAHQKQQQWTPQRFERWASQFGKSTEQFVMQLMQAKKHPEQSYRACMGLLSLGKKFTDQRLEAACHRALATGVTRV
KQVKTILEKGLDKQPLPQAQGDSLQDIDHKNIRGNNYYH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAC39294.1 hypothetical protein Not tested LPA Protein 1e-159 61
ORF_6 AAZ04417.1 putative transposase subunit Not tested PAI I APEC-O1 Protein 5e-160 61
APECO1_3528 YP_854247.1 transposase for ISEc12 Not tested PAI I APEC-O1 Protein 7e-160 61
VPI2_0005c ACA01822.1 IstA Not tested VPI-2 Protein 2e-119 49