Gene Information

Name : fliP (Sfri_1192)
Accession : YP_749883.1
Strain : Shewanella frigidimarina NCIMB 400
Genome accession: NC_008345
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1402201 - 1402962 bp
Length : 762 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGAATAAGTACACAACAGTATTGGCATTGGCGATGATGGCGCTAGTGGCACTAATTTTGTCGCCCACAGCACTGGCTCA
AGACGGTGTGCTACCAGCGTTAACGGTTACAACCGCTGCAGACGGAACAACTGAATATTCGGTAACCATGCAGATTTTAT
TGCTGATGACAGCAATGAGTTTTATTCCTGCAATGGTGATAATGCTCACTTCATTTACCCGCATTATTGTTGTGCTATCG
ATATTAAGACAAGCTTTAGGTTTACAACAAACACCTTCTAATCAGGTATTGATAGGCATCAGTTTGTTCATGACTTTTTT
TATTATGGCGCCGGTTTTTGACAAGATTTATGCTGAAGCTGTAGAGCCTTATATCAATGAAACCATGACGTTAACGCAAG
CTTATGATGTTGGAAAAGAACCGATTAAAACATTTATGCTATCGCAAGTGCGTACCACTGACTTACAAACATTTATTGAA
ATCTCTGGCTATAAGGATATTCAATCTCCTGAGCAAGCACCAATGAGCGTGGTGATCCCAGCGTTTATTACCAGTGAACT
TAAAACGGCGTTCCAAATCGGCTTTATGCTGTTTGTGCCTTTTTTAGTACTCGATTTGGTCGTCGCCAGTATTCTAATGG
CCATGGGTATGATGATGTTGTCACCGATGATTGTGTCATTGCCATTTAAAATTATGTTGTTTGTACTCGTCGATGGTTGG
GGCTTAGTGATGGGTACATTAGCGAATAGTTTCGGAATATAA

Protein sequence : 
MNKYTTVLALAMMALVALILSPTALAQDGVLPALTVTTAADGTTEYSVTMQILLLMTAMSFIPAMVIMLTSFTRIIVVLS
ILRQALGLQQTPSNQVLIGISLFMTFFIMAPVFDKIYAEAVEPYINETMTLTQAYDVGKEPIKTFMLSQVRTTDLQTFIE
ISGYKDIQSPEQAPMSVVIPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGW
GLVMGTLANSFGI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-14 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-14 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-14 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-16 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_749883.1 flagellar biosynthesis protein FliP VFG1259 Protein 2e-55 66
fliP YP_749883.1 flagellar biosynthesis protein FliP VFG2016 Protein 1e-47 59
fliP YP_749883.1 flagellar biosynthesis protein FliP VFG2494 Protein 4e-49 57
fliP YP_749883.1 flagellar biosynthesis protein FliP VFG2338 Protein 7e-45 52