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Name : smpB (Sfri_1094) Accession : YP_749785.1 Strain : Shewanella frigidimarina NCIMB 400 Genome accession: NC_008345 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1293504 - 1293992 bp Length : 489 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGTAAAAAAGAAATCAGCAAACGCCTCAGCGAGCATCGCACGCAATAAACGCGCGACCTTTGAATACCGCATAGAAGA CAAAATCGAAGCGGGATTACAACTTATGGGCTGGGAAGTTAAGTCCATTCGCATGGGTAAAGTAAATTTATCTGATTGTT ATGTCTATATTAAAGAGGGTGAAGCCTTTATGCATGGTTGTACTATTCAACCACTTAATACAGCTTCAACCCATGTAATA TGTGATCCAATCAGAACCAAAAAACTGCTATTAAAGCGCAGTGAAATTGACAAACTTGCCGGCCTAATTGAGCGTCAAGG CTACACCTTGGTGCCACTATCAATGTACTGGCGCAAAGGCGCTTGGGTAAAAGTTGAAATTGGCTTAGGTAAAGGTAAAA AAGATCACGACAAACGTGAAGACACCAAAGAACGCGAGTGGAAAATTGAAAAAGCTCGTGTAATGAAAAAAGACAAAGAA AACGCTTAA Protein sequence : MVKKKSANASASIARNKRATFEYRIEDKIEAGLQLMGWEVKSIRMGKVNLSDCYVYIKEGEAFMHGCTIQPLNTASTHVI CDPIRTKKLLLKRSEIDKLAGLIERQGYTLVPLSMYWRKGAWVKVEIGLGKGKKDHDKREDTKEREWKIEKARVMKKDKE NA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 1e-37 | 61 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 1e-20 | 44 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 2e-14 | 43 |
