Gene Information

Name : Sfri_0108 (Sfri_0108)
Accession : YP_748809.1
Strain : Shewanella frigidimarina NCIMB 400
Genome accession: NC_008345
Putative virulence/resistance : Virulence
Product : general secretion pathway protein G
Function : -
COG functional category : N : Cell motility
COG ID : COG2165
EC number : -
Position : 123379 - 123813 bp
Length : 435 bp
Strand : +
Note : TIGRFAM: general secretion pathway protein G; PFAM: methylation site containing protein; Bacterial type II secretion system protein G; KEGG: son:SO0169 general secretion pathway protein G

DNA sequence : 
ATGCAACATAATAATAAACAACGTGGTTTCACCTTACTCGAAGTAATGGTGGTGATTGTTATTTTAGGTATTTTAGCGTC
AATGGTTGTGCCCAATCTGATGGGTAACAAAGATAAAGCCGATCAACAAAAAGCGGTATCAGATATTGTGGCATTAGAAA
ATGCATTGGATATGTATAAGTTAGATAACAGTATTTATCCAACCACAGAACAAGGTCTCGATGCGTTGGTGCAAAAACCT
ACCTCGTCACCAGAGCCGCGTAATTTCCGTGAAGGTGGGTATGTTAAACGTTTACCACAAGATCCATGGCGCAGTGACTA
TTTATTATTAAGCCCTGGTGAAAATGGCAAAATTGACATCTTCAGCGCAGGACCAGATGGACAACCAGGTTCTGAAGACG
ATATCGGAAGCTGGAATTTACAAGATTTCCAATAA

Protein sequence : 
MQHNNKQRGFTLLEVMVVIVILGILASMVVPNLMGNKDKADQQKAVSDIVALENALDMYKLDNSIYPTTEQGLDALVQKP
TSSPEPRNFREGGYVKRLPQDPWRSDYLLLSPGENGKIDIFSAGPDGQPGSEDDIGSWNLQDFQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspG YP_854404.1 type II secretion protein GspG Not tested PAI I APEC-O1 Protein 1e-45 67
gspG CAE85231.1 GspG, hypothetical type II secretion protein Not tested PAI V 536 Protein 1e-45 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sfri_0108 YP_748809.1 general secretion pathway protein G VFG2050 Protein 4e-46 67
Sfri_0108 YP_748809.1 general secretion pathway protein G VFG1871 Protein 1e-35 56
Sfri_0108 YP_748809.1 general secretion pathway protein G VFG0180 Protein 2e-33 53