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Name : Sfri_0107 (Sfri_0107) Accession : YP_748808.1 Strain : Shewanella frigidimarina NCIMB 400 Genome accession: NC_008345 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 122050 - 123282 bp Length : 1233 bp Strand : + Note : TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: son:SO0168 general secretion pathway protein F DNA sequence : ATGGCGGCGTTTGAATACAAAGCCCTTGATAGCAAAGGCAAGCAACAAAAAGGTGTGATCGAAGCTGATACCGCGCGACA TGCAAGAAGCCAGCTGCGTGAGCAGCGCCTTATGCCGCTGGAACTTCAGCCTGTTAGTGAAAAAGAAGCACGTTCACAGC GTGGCGGTTTTAATTTAGCAAACCTATTTAAAAAGCGTATTTCTGTTGCCGAACTGGCATTGATCACACGCCAAATCGCA ACATTAGTGGCCGCAGGCTTACCGATTGAAGAAGCGTTAAAAGCCGTGGGGCAGCAGTCTGAGAAAGATCGCTTAGGTAG CATGATTATGGCGGTGCGTTCTCGGGTGGTTGAAGGTTACAGCTTAGCTGACTCAATGGCCGAATTTCCGCATGTATTTG ATGATTTATACCGCGCGATGGTAGCGTCGGGTGAGAAATCAGGCCATTTAGAAGTAGTGCTTAATCGACTTGCCGATTAC ACAGAGCGTCGTCAGCAACTCAAATCCAAGCTTACTCAAGCAATGATTTACCCTATTGTATTAACCGTGGTCGCTATTGG TGTTATTGCCGTGTTATTGGCTGCTGTGGTGCCAAAGGTTGTTGGGCAGTTTGAGCACATGGGCCAAGAATTACCTGGCA CAACTCAGTTTTTGATTCTTGCCTCAGATTTTGTACAACATTGGGGGGTTGTGGTCGTACTGCTTATTTTTGCTGCTATG GTGATGTTCCAGCGGCTGCTTACCAATCCGATTATGCGGATGAAATATGATACAGCTCTTTTGCAAATGCCCGTAATTGG CAAAGTCAGTAAAGGGCTTAATACCGCCCGATTTGCGCGAACATTAAGTATTTTGTCAGCCAGCTCGGTCCCATTACTTG ATGGGATGCGAATTGCCAGCGAAGTTTTGCAAAATGTTAAGGTGCGCGCTGCTGTTGATGAGGCTACGGCGCGAGTCCGT GAGGGAACTAGTTTAGGCACGGCGTTGACTAATACTAAGCTATTCCCTGCAATGATGTTGTATATGATTGCATCGGGTGA AAAAAGTGGCCAGCTTGAAAACATGTTAGAACGTGCAGCAGACAACCAAGACCGAGAGTTCGAGTCGAACGTTAATATTG CATTGGGAGTATTTGAACCTATGCTAGTCGTGAGTATGGCATCGGTTGTATTATTTATTGTAATGGCCATTTTACAGCCT ATTTTAGAGTTAAATAACTTAATCAGCGGCTAG Protein sequence : MAAFEYKALDSKGKQQKGVIEADTARHARSQLREQRLMPLELQPVSEKEARSQRGGFNLANLFKKRISVAELALITRQIA TLVAAGLPIEEALKAVGQQSEKDRLGSMIMAVRSRVVEGYSLADSMAEFPHVFDDLYRAMVASGEKSGHLEVVLNRLADY TERRQQLKSKLTQAMIYPIVLTVVAIGVIAVLLAAVVPKVVGQFEHMGQELPGTTQFLILASDFVQHWGVVVVLLIFAAM VMFQRLLTNPIMRMKYDTALLQMPVIGKVSKGLNTARFARTLSILSASSVPLLDGMRIASEVLQNVKVRAAVDEATARVR EGTSLGTALTNTKLFPAMMLYMIASGEKSGQLENMLERAADNQDREFESNVNIALGVFEPMLVVSMASVVLFIVMAILQP ILELNNLISG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 2e-90 | 56 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-90 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sfri_0107 | YP_748808.1 | general secretion pathway protein F | VFG2049 | Protein | 6e-89 | 56 |
| Sfri_0107 | YP_748808.1 | general secretion pathway protein F | VFG0181 | Protein | 1e-83 | 48 |
| Sfri_0107 | YP_748808.1 | general secretion pathway protein F | VFG1870 | Protein | 1e-77 | 44 |
