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Name : Sfri_0106 (Sfri_0106) Accession : YP_748807.1 Strain : Shewanella frigidimarina NCIMB 400 Genome accession: NC_008345 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 120502 - 122046 bp Length : 1545 bp Strand : + Note : KEGG: son:SO0167 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase DNA sequence : ATGACAGAACCATTAGCCCAAGTATCTAGTGAAGTTGCCATGGAAGTTGTTGAAGGTGATGAAGTTTTTCATTCGACGAG TAAAGAGCGCTTGCCGTTTGCTTTTTCGCACCGCTTTCAATTAGTGTTAGCGAAAGAAAACGATCAGCTTTGTCTTTTCT ATACCGATAACACACCACTTAGCGCCATGCTAGAGGTACGGCGCTACGCGGGTGTTGAGTTACCGTTAATTAAACTAGAA GTGGCTAAGTTTGAAGCTAAATTGACCCTGGCGTACCAAGCCAACTCTTCAGAAGCGCAACAGCTTATGGAAGATATTGG TAATGAAATGGACTTGTTTACTCTAGCTGAGGAACTGCCACAAACAGAAGACTTGCTTGAGGGCGACGATGATGCGCCGA TTATTAAATTAATTAATGCGCTGTTATCAGAAGCAATTAAAGAAGAAGCCTCAGACATTCACGTCGAAACCTATGAGAAA CAACTCGTTGTTCGTTTCCGTATTGATGGCGTGTTGAAAGAAGTATTAAAGCCAAATCGTAAATTGTCGTCTTTGTTAGT GTCGCGTATTAAAGTTATGGCACGTTTAGACATTGCCGAAAAACGTCTGCCACAAGATGGCCGTATTTCGTTGCGTATTG CGGGTCGTGCTGTCGATGTGCGGGTATCAACTATGCCATCAAGTCATGGTGAGCGTGTGGTAATGCGTTTATTGGACAAA AATACCGGCAACTTAGACTTACAACAACTGGGTATGACACCAGGCATTCGTGAAAAATTCGATGAGTTAATTCGTAAGCC ACACGGCATTATTCTTGTTACCGGGCCTACTGGTTCTGGTAAAAGTACCACTTTGTACGCTGGGTTAACGGAAATAAATT CTAAAGATACCAATATTTTAACCGTTGAAGATCCTATTGAGTATGAGTTAGAGGGCGTTGGACAAACTCAGGTAAACACT AAAGTCGACATGACTTTTGCTCGAGGATTACGCGCAATTTTACGTCAAGATCCCGATGTAGTCATGATTGGTGAAATTCG TGATTTAGAAACGGCGCAAATTGCAGTTCAAGCATCTTTAACTGGTCACTTAGTTATTTCAACCTTGCATACCAATACCG CATCTGGGGCAATTACCCGTCTACAAGATATGGGCGTAGAACCCTTTTTAGTGTCATCAAGTTTGCTTGGCGTGCTTGCA CAACGCTTAATTCGAACATTATGCCCACAGTGTAAAGAAGCACATGAGCCTGATGAGCGTGAACGCGAGTTACTGGGTAT TACTGCAAACGACACTCGTATCATTTACCGCGCAAAAGGTTGTAAGGCCTGTGGTCAAAATGGTTATCGTGGTCGAACGG GTATTCATGAGTTACTTATCGTTGATGATAATGTCCGTGAGTTAATTCATGGCGGCAGGGGCGAATTAGCCATTGAAAAA TATGTGCGTAAATCGATTCCAAGTATTCGCCATGACGGCATGAGTAAAGTACTCGCTGGTGTGACAACGCTAGAAGAAGT ATTACGCGTTACACGCGAGGAGTAA Protein sequence : MTEPLAQVSSEVAMEVVEGDEVFHSTSKERLPFAFSHRFQLVLAKENDQLCLFYTDNTPLSAMLEVRRYAGVELPLIKLE VAKFEAKLTLAYQANSSEAQQLMEDIGNEMDLFTLAEELPQTEDLLEGDDDAPIIKLINALLSEAIKEEASDIHVETYEK QLVVRFRIDGVLKEVLKPNRKLSSLLVSRIKVMARLDIAEKRLPQDGRISLRIAGRAVDVRVSTMPSSHGERVVMRLLDK NTGNLDLQQLGMTPGIREKFDELIRKPHGIILVTGPTGSGKSTTLYAGLTEINSKDTNILTVEDPIEYELEGVGQTQVNT KVDMTFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHLVISTLHTNTASGAITRLQDMGVEPFLVSSSLLGVLA QRLIRTLCPQCKEAHEPDERERELLGITANDTRIIYRAKGCKACGQNGYRGRTGIHELLIVDDNVRELIHGGRGELAIEK YVRKSIPSIRHDGMSKVLAGVTTLEEVLRVTREE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 8e-156 | 64 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-156 | 64 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sfri_0106 | YP_748807.1 | general secretory pathway protein E | VFG0182 | Protein | 2e-152 | 65 |
| Sfri_0106 | YP_748807.1 | general secretory pathway protein E | VFG2048 | Protein | 6e-156 | 64 |
| Sfri_0106 | YP_748807.1 | general secretory pathway protein E | VFG1876 | Protein | 1e-137 | 58 |
| Sfri_0106 | YP_748807.1 | general secretory pathway protein E | VFG0112 | Protein | 3e-85 | 47 |
| Sfri_0106 | YP_748807.1 | general secretory pathway protein E | VFG2426 | Protein | 9e-78 | 45 |
