|
Name : Sfri_0105 (Sfri_0105) Accession : YP_748806.1 Strain : Shewanella frigidimarina NCIMB 400 Genome accession: NC_008345 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 118362 - 120494 bp Length : 2133 bp Strand : + Note : TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: son:SO0166 general secretion pathway protein D DNA sequence : ATGAATAATAAAGGGATCCGACATAACATTATTGCTGGAATGCTTATGGGCGCTGCAATGATAGCGGCACCGAGTGCTTG GTCGGAACAATATGCCGCCAATTTTAAAGGCACTGACATTCAAGAATTTATTAATATTGTCGGTAAAAACCTCAATAAAA CCATTATTGTAGATCCAACAGTACGTGGCAAAATTAATGTCCGTAGTTACGATTTACTTAATGATGATCAATATTACCAA TTCTTCCTTAACGTACTTCAAGTGTATGGTTATGCAGTGGTTGAAATGGAAAACCACGTCATTAAAGTCATTAAAGACAA AGACGCCAAAATGGCTTCTATTCGTGTCGCCGATGACAAGTCGCCTGGTGTTGGTGATGAAATGGTCACCCGAATTGTTC CTTTATACAATTCTGAAGCTAAACAACTTGCTCCCTTACTTCGCCAGTTGAATGATAATGCTGGTGGCGGTAACGTTGTT AACTATGATCAATCAAACGTGTTAATGATTTCTGGTCGTGCAGCGGTAGTGAACAAGTTGGTAGAGATTGTTCGCCGAGT TGATAAGCAAGGCGACACCGACGTACAAGTCGTGGCTTTAGATTACGCCTCTGCAGGGGAAATTGTTCGCATAGTCGATA CCTTATATCGCTCAAGTGCTAACCAATCACAGCTGCCAGGCCAAGCGCCTAAAGTGGTGGCTGATGAGCGCATGAATGCG GTTATTGTCAGTGGCGATGAAAAAAGTCGTCAACGTGTAATCGAACTCATTAAACGCCTCGATGCTGAACAGGCTAGTAC GGGTAACACCAAGGTACGTTATTTACGTTACGCCAAAGCAGAAGACTTAGTTGAAGTATTAACTGGGTTTGCACAAAACT TACAAGATAATAAAGAGGGTGCCAGTACTCAGCAAGGCAACTCAAGTAAGCGTCGTAGTGATATCAATATTATGGCCCAC AGCGACACTAACTCACTGGTGATTAGTGCTGAACCAGATCAACTGCGTACCATTGAAAGCGTCATTAATCAGCTTGATAT TCGCCGTGCTCAAGTGCTCGTTGAAGCCATTATTGTTGAAATCGCTGAAGGCGATAATGTTGGTTTTGGAGTGCAATGGG GCAGCGAAGCGGGTGGCTTAACGCAGTTTAACAACATTGGCCCAACCATTGGTGAAGTCGGTGCCGGTGTGTGGTCTGCA CGCGAAACTGATGGCACTACAGTAACAGTAGGCAATTCAGATGGCGGCTCTACTACCACCACCAATCCAACCTCTGATGG GGATTACACTTTAATCGCGCAAGCATTGGGTAAAGTGAATGGTATGGCGTGGGGCGTGACCACAGGTAACTTTGCGGCGT TAATCCAAGCTGTGTCGAGTGATACAAATTCAAACGTACTAGCAACACCGTCTATTACCACACTAGATAACCAAGAAGCC TCGTTTATTGTCGGTGATGAAGTGCCGATTATTACCGGTTCAACCTCAAGTTCTAACAATGATAATCCATTCCAAACGGT AGAACGTAAGGAAGTCGGAGTTAAGCTCAAAGTGGTACCGCAAATCAACGAAGGTTCATCGGTTAAATTAACTATTGAAC AAGAAGTGTCGGGTGTTAATGGTAACACTGGTGTCGACATCAGTTTCTCTACTCGTCGTTTAACGACCACGGTTATGGCA GATTCAGGCCAAATTGTGGTGCTGGGTGGATTAATTAACGAAGAAGTACAAGAAAGTATTCAAAAAGTCCCAATTCTTGG CGATATTCCTTTTATAGGTCATTTATTCAAGTCTTCTTCTAGTAAGAAAACGAAAAAGAATTTAATGATTTTTATTAAGC CCACCATTATCCGTGACGGTATGACAATGGAAGGGATTGCTGGTCGTAAATATAATTATTTCAGAGCATTACAACTGGAA CAACAAGCTCGTGGTATTAATTTAATGCCAAATACTCAAGTCCCAGTTCTTGAAGAATGGGATCAAGAGGCCTACTTGCC AGATGAAGTGAATGACATGCTTGATCGCTATAAAAGCGGCAAAGGGCTGAGCACCGATATACGTGATTCAGACCCTGCCT TGCGCACTATCGATGAAAGCATGCAAAAGGACAAGGCTCAAAACAATGACTGA Protein sequence : MNNKGIRHNIIAGMLMGAAMIAAPSAWSEQYAANFKGTDIQEFINIVGKNLNKTIIVDPTVRGKINVRSYDLLNDDQYYQ FFLNVLQVYGYAVVEMENHVIKVIKDKDAKMASIRVADDKSPGVGDEMVTRIVPLYNSEAKQLAPLLRQLNDNAGGGNVV NYDQSNVLMISGRAAVVNKLVEIVRRVDKQGDTDVQVVALDYASAGEIVRIVDTLYRSSANQSQLPGQAPKVVADERMNA VIVSGDEKSRQRVIELIKRLDAEQASTGNTKVRYLRYAKAEDLVEVLTGFAQNLQDNKEGASTQQGNSSKRRSDINIMAH SDTNSLVISAEPDQLRTIESVINQLDIRRAQVLVEAIIVEIAEGDNVGFGVQWGSEAGGLTQFNNIGPTIGEVGAGVWSA RETDGTTVTVGNSDGGSTTTTNPTSDGDYTLIAQALGKVNGMAWGVTTGNFAALIQAVSSDTNSNVLATPSITTLDNQEA SFIVGDEVPIITGSTSSSNNDNPFQTVERKEVGVKLKVVPQINEGSSVKLTIEQEVSGVNGNTGVDISFSTRRLTTTVMA DSGQIVVLGGLINEEVQESIQKVPILGDIPFIGHLFKSSSSKKTKKNLMIFIKPTIIRDGMTMEGIAGRKYNYFRALQLE QQARGINLMPNTQVPVLEEWDQEAYLPDEVNDMLDRYKSGKGLSTDIRDSDPALRTIDESMQKDKAQNND |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 2e-150 | 51 |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 8e-142 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sfri_0105 | YP_748806.1 | general secretion pathway protein D | VFG2047 | Protein | 9e-141 | 50 |
