|
Name : lysS (Neut_0872) Accession : YP_747100.1 Strain : Nitrosomonas eutropha C91 Genome accession: NC_008344 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 892152 - 893750 bp Length : 1599 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGCGGCAGCGGCTCCAGGATGTCCGTGCCGCTTGGTACGATACAGAGAGATTTTATACCAATAAAAATTACATAAAATT TGGAATAGATATGACCCAGGAAGATACATCCGGTATTTCCCAGGATGAAAACAGCCTTATTGCAGAGCGTTATTCTAAAT TGACTGCATTGCGCCAGATCGGCAATGCTTTTCCGAATGATTATCGTCGGGATAGCCTGGCTCGTGACCTGCATGAAAAG TATGATAATGACTCAAGAGAAGAACTGGAAAGTGGGCAGGTTAAAGTAAAAGTTGCAGGACGCATGTTGTTTAAGCGTGT AATGGGAAAGGCAAGCTTTGCAACGATCCAGGATATGAGCGGGCGGATACAGCTCTATATCTCCAATGATCATACCGGAG AATCCGCTCACGAAGCATTCAGGCATTATGATCTGGGGGATATTCTCGGCGCGGAAGGTATTTTGTTCAAAACCAGGACG GATGAATTGTCATTACGGGTTACCCGACTTCGTCTTCTGACTAAATCCTTGCGCCCGCTACCGGAGAAATTTCATGGCCT TATCGATCAGGAACAGAAATACCGGCGACGTTACCTTGATCTGATTACAAATGAAGAAACACGCAAGGTATTCCTGGTTC GCTCAAAAATTATTCAGGCAGTACGTGAATTTCTGGTTAACCGGGGCTATCTTGAAGTTGAAACGCCGATGATGCACTCT ATTCCAGGAGGGGCTACTGCTCGACCTTTTATTACGCATCATAATGCATTGGATATGTCACTGTATCTGCGTATCGCACC GGAACTTTACCTGAAGCGGTTGGTAGTGGGTGGTATGGAAAAAGTTTTTGAGATTAACCGTAATTTCAGGAATGAAGGTA TATCCACTCGCCATAATCCGGAATTCACCATGCTGGAGTTTTATGAGGCTTATCAAGATCATCATTACCTGATGGATCTG ACGGAATCCATGCTGCGTGAAGTTGCGCTGAAGGTGTTAGGAACCACTCGCATTGTCTATCAGCAGCGCGAAATGGATCT TGCCCGGCCTTTTGCCCGGTTGACTGTCATGCAGGCCATCCTAAAATACCACCCTGAAAATTCCGAAGCACAACTTAACA ACAGGGATGATTTGATCAAAATTTTGCAGGCAAAGGGAATCGGATTCAATCCGGACAGTGGAATCGGCGGACTGCAATTG GCCTTGTTTGATGAAACAACCGAACATTTGCTGTTTGAACCCGTATTTATCGTTGATTATCCGGCCGAGGTATCGCCTTT GGCACGCCGCAATGATCAAAATCCGGAGATTACGGATCGTTTTGAGCTTTATATTGCCGGGCGGGAAATTGCGAACGGCT TTTCCGAGCTAAATGATCCTGAAGATCAGGCCAGTCGTTTCCTTGAACAGGCCAGGGCTAAAGAGGCAGGTGATATGGAA GCGATGCACTATGACGCTGACTATATCCAGGCACTGGAATACGGATTGCCGCCAACGGCAGGTGAGGGAATCGGTATCGA TCGGCTAGTAATGTTGCTGACAGATTCTCCAAGCATCCGCGATGTTATTCTGTTTCCGCAGTTACGCAAGGAAGACTAG Protein sequence : MRQRLQDVRAAWYDTERFYTNKNYIKFGIDMTQEDTSGISQDENSLIAERYSKLTALRQIGNAFPNDYRRDSLARDLHEK YDNDSREELESGQVKVKVAGRMLFKRVMGKASFATIQDMSGRIQLYISNDHTGESAHEAFRHYDLGDILGAEGILFKTRT DELSLRVTRLRLLTKSLRPLPEKFHGLIDQEQKYRRRYLDLITNEETRKVFLVRSKIIQAVREFLVNRGYLEVETPMMHS IPGGATARPFITHHNALDMSLYLRIAPELYLKRLVVGGMEKVFEINRNFRNEGISTRHNPEFTMLEFYEAYQDHHYLMDL TESMLREVALKVLGTTRIVYQQREMDLARPFARLTVMQAILKYHPENSEAQLNNRDDLIKILQAKGIGFNPDSGIGGLQL ALFDETTEHLLFEPVFIVDYPAEVSPLARRNDQNPEITDRFELYIAGREIANGFSELNDPEDQASRFLEQARAKEAGDME AMHYDADYIQALEYGLPPTAGEGIGIDRLVMLLTDSPSIRDVILFPQLRKED |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 8e-122 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_747100.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 4e-122 | 55 |
