|
Name : Neut_0537 (Neut_0537) Accession : YP_746777.1 Strain : Nitrosomonas eutropha C91 Genome accession: NC_008344 Putative virulence/resistance : Unknown Product : type I site-specific deoxyribonuclease, HsdR family protein Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 559110 - 562328 bp Length : 3219 bp Strand : - Note : KEGG: dge:Dgeo_2012 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD/DEAH box helicase domain DNA sequence : ATGGCATTTCTGTCGGAGGCTGCCGTGGAGCAAGCACTGTTGGATCAGTTACGTGCTTTAGGCTACAGCATTGAGCAAGA GGAAATCATCGGCCCCGACGGTAAGCAGTCTGAGCACGAGAGTCATGATGAGGTTGTGCTCAAGAAGCGCTTCGAGGATG CAGTCGCGCGTCTGAACCCTGGCCTACCGCTGGAAGCGCGTCAGGATGCGGTTCACAAAGTGATGCAGTCAGAGCTGCCC TCACTGCTGGAGGAGAACCGCCGCTTGCACAAGCTGCTGACGGAAGGTGTAGATGTGGAGTACTACACCAACGATGGCAC CCTGACGGCGGGCAAGGTCGCGCTGATTAACTTTGAACATCCAGAACAAAACGACTGGCTGGCTGTGAGCCAGTTTGTGG TAATCAACGATCAAAATAACCGGCGGCCCGATGTGGTGGTATTCGTCAACGGGTTACCGTTAGGTGTGATTGAGCTGAAA GCACCGGGTAACGCTGGAGCACATCTGCTGGGCGCATTTAACCAATTGCAAACCTACAAACAGCAGATTCCGCAACTTTT TAACACCAACGCACTGCTGGTGACCTCCGACGGTATTACGGCACGAGTGGGGTCGCTATCGGCAGACCTTGAGCGTTTTA TGCCATGGCGCACCACCGACGGCACACGCATCGAACCCAAAGGCATGCCGGAGATGGCCACGCTGATCGAGGGCGTGTTC GAGCAAGGACGCTTTCTCGACCTGCTGCGCCATTTCACCGTGTTTGGCGAAACCGGTGGCGGGCTGATCAAGATCATCGC CGGCTACCACCAGTTTCACGCGGTGAAGAAGGCGGTAGTTTCTACGTTACGGGCGAGCCAGCCATCGGATCGTCTCGGAG TGGCCGAGGACCCGGCTGTCTACGGGCTACCCAGCGTTAAGGTCCAACCGCCTGGTGATCACAAGGCCGGGGTGATCTGG CATACGCAGGGTTCCGGCAAGAGCCTGCTGATGGCGTTTTACGCGGGCCTGCTGGTATTCGACTCGCGCATGGCCAACCC CACGTTGGTGGTGCTCACCGACCGCAACGATCTGGACGACCAGTTATTCGCTACCTTCGCCATGTGCAAGGACCTGCTGC GCCAGACGCCGGTGCAGGCGCAGGACCGCGAGCATCTGCGCACCCTGCTCAACCGCGCTTCGGGCGGCGTGATCTTTACC ACTCTGCAGAAGTTTTCCCCGGCGGCAGACGAGACCGATTTCCCCGCGCTCACGAATCGGTCCAACATCGTGGTCATCGC CGACGAAGCGCACCGCAGCCAGTACGGCTTCAGAGCAAAAGTGGCCAGCAAAACCGGTGAGATTGCCTACGGCTTTGCCA AATATCTGCGTGATGCGCTGCCCCATGCCTCCTTCATCGGCTTTACCGGTACGCCCATCGAAGCCGCCGATGTGAACACG CCGGCGGTGTTCGGCCACTACATCGACATCTACGACATCAGCCGTGCGGTGGAAGATGGCGCTACGGTGCCGATCTATTA CGAATCGCGGCTGGCGCGCATCGAACTGGATGAGGACGAGAAACCGCACATCGACGCCGAGATCGAGGCACTGCTGGAAG ACGAAGTTGAGGCCAGCGCCGAACGCACCAAACAGAAATGGAGCACCGTGGAGGCACTGGTGGGCAGCGACAAGCGCCTC GCCCTGGTGGCCGCCGACCTGGTGCAGCACTTCGAGGACCGGGTGGCGGCACTCTCAGGCCGCGCGATGATGGTGTGCAT GAGCCGGCGCATCTGTGTGGCGCTGTATGACCAGATCATCAAGCTGTGCCCCGACTGGCACAGCAACGATGACAACGCCG GCAGCATCAAGATCGTGATGACCGGCACGGCGTCTGACCCGGTTGAGTGGCAACAGCACATCGGAAACAAGGCGCGCCGT GATCTGCTGGCCAAGCGTGCCCGTGATCCGCAGGACCCGCTGCGGCTGGTGATCGTGCGCGACATGTGGCTGACTGGCTT CGATGCGCCCAGCATACATACCATGTATATCGACAAGCCGATGCGTGGCCACGGCCTGATGCAGGCCATTGCCCGCGTTA ACCGGGTGTTCCGTGACAAGCCGGCGGGCTTGATCGTGGATTACATCGGCATTGCCCAGAACCTGAAGTCGGCCCTCGCC CAGTATTCCAAACCGGATCAAGACAAAACCGGTATTGATGAGCGGGAGGCCGTGGCGGTGTTGTTGGAGAAGGTCGAGAT TGTGCGCGACATGTTCTTTGGGTTCGACTACCAAACCGGCCTTGGCGGCACGCCCAGCGAGCGGCTGGCGATGATGGCCA GCGCCATCGAATGGATACTCGACAAGCAGCAGCAATGGGCGGCGGCAGAAAAGACGCCAGAGGCTTCGAGGCAGGCGCGA CGGCGCTTTGCCGATGGCGTACTGAGTCTATCGAAGGCCTTTGCACTGGTGGCAAGTTCGGATGAAGCGCGCGGCATCCG CGAGGAAGTCGGTTTCTTCCAGGCCATCCGTGCTGCGCTAGTCAAGACGGCGGGCGGTGCAGGGGCTATCCGGCAGGATC GGGAACTAGCCATCCAGCAGATCGTCAGCCGTGCTGTGGTCTCCACCGAGATCGTCGATATCCTTGCTGCTGCTGGCATC CAGACGCCGGATATCTCCATCCTCTCCGACGAGTTTCTGCTTGAAGTGCAGCAGATGGAGAAAAAGAATCTGGGGCTGGA AGCGCTGCGCAAGCTGCTCAATGACAGCATCCGCTCGCGCACCCGCACCAACGTGGTTGAGACTCGCGCTTTCACCGAGC GGTTGGAAGACGCCATTGCCCGTTATCACGCCAATGCTATCACCACCGCCGAGGTGCTGCAGGAACTGATCAATTTGGCG CAGGACATTCGCGCCGCGCGCAATCGCGGCGAGGAACAGGGCTTATCCCTTGATGAGATCGCCTTTTACGACGCGCTGGC GGAGAACGAATCTGCTGTGCAGGTGATGGGTGACGACAATTTGCGGGTTATCGCTCACGAGCTGCTGGTCAGCCTGAAAG AAAACATTGCCGTTGACTGGGCCCACCGTGAATCGGCCCGGGCGCGGCTGCGCGTGCTGGTCAAGCGCATCCTGCGCAAA TATGGCTACCCACCCGACCTGCAGGATGCGGCGGTGCAGACCGTATTGCAGCAGGCGGAGGCATTGTCGTCAGAATGGAG TGTGGCTGGATATGGATGA Protein sequence : MAFLSEAAVEQALLDQLRALGYSIEQEEIIGPDGKQSEHESHDEVVLKKRFEDAVARLNPGLPLEARQDAVHKVMQSELP SLLEENRRLHKLLTEGVDVEYYTNDGTLTAGKVALINFEHPEQNDWLAVSQFVVINDQNNRRPDVVVFVNGLPLGVIELK APGNAGAHLLGAFNQLQTYKQQIPQLFNTNALLVTSDGITARVGSLSADLERFMPWRTTDGTRIEPKGMPEMATLIEGVF EQGRFLDLLRHFTVFGETGGGLIKIIAGYHQFHAVKKAVVSTLRASQPSDRLGVAEDPAVYGLPSVKVQPPGDHKAGVIW HTQGSGKSLLMAFYAGLLVFDSRMANPTLVVLTDRNDLDDQLFATFAMCKDLLRQTPVQAQDREHLRTLLNRASGGVIFT TLQKFSPAADETDFPALTNRSNIVVIADEAHRSQYGFRAKVASKTGEIAYGFAKYLRDALPHASFIGFTGTPIEAADVNT PAVFGHYIDIYDISRAVEDGATVPIYYESRLARIELDEDEKPHIDAEIEALLEDEVEASAERTKQKWSTVEALVGSDKRL ALVAADLVQHFEDRVAALSGRAMMVCMSRRICVALYDQIIKLCPDWHSNDDNAGSIKIVMTGTASDPVEWQQHIGNKARR DLLAKRARDPQDPLRLVIVRDMWLTGFDAPSIHTMYIDKPMRGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKSALA QYSKPDQDKTGIDEREAVAVLLEKVEIVRDMFFGFDYQTGLGGTPSERLAMMASAIEWILDKQQQWAAAEKTPEASRQAR RRFADGVLSLSKAFALVASSDEARGIREEVGFFQAIRAALVKTAGGAGAIRQDRELAIQQIVSRAVVSTEIVDILAAAGI QTPDISILSDEFLLEVQQMEKKNLGLEALRKLLNDSIRSRTRTNVVETRAFTERLEDAIARYHANAITTAEVLQELINLA QDIRAARNRGEEQGLSLDEIAFYDALAENESAVQVMGDDNLRVIAHELLVSLKENIAVDWAHRESARARLRVLVKRILRK YGYPPDLQDAAVQTVLQQAEALSSEWSVAGYG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 47 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 47 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 47 |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 47 |
