Gene Information

Name : Neut_0303 (Neut_0303)
Accession : YP_746552.1
Strain : Nitrosomonas eutropha C91
Genome accession: NC_008344
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 311300 - 312127 bp
Length : 828 bp
Strand : -
Note : PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein

DNA sequence : 
ATGTGCCGGCTATTGGGTGTCAGTCGCAGTGCTTACTATGACTATGAACAACGCCGCTGCAATTGCCCGGATGATCTACA
CCACAGGCAACTACTTAATGCTGTGCAGAATATTGCAAAATCATGCGATTACACCTATGGCAGTCGCAGGATGAAACGAG
CGCTAAATGCCTTGGACTATCGGGTTAGTCGCTGGAAGGCGAGAAGACTAATGCAAGAAGCCGGGATACAAGTGAAACAC
CGGAAGAAGTACAAGGTGACGACGGACAGCAATCACCCGTTGCCAGTGTTTGAGAACCAATTGAATCGGCAATTTACGGT
TGCCAGACCGGATCAAGTCTATGTTTGCGACATTACCTGCATTTGGACTCAGGAAGGCTGGCTGTATCTGGCGGTTGTCA
TCGATTTGTTCTCCCGAAAGGTGGTGGGCTGGAGTATGAGCTCACGGATGAAAGCAACACTGGTTTGTGATGCATTACGA
ATGGCGATCTGGCTACACCGGCCACCGCCTGGCCTGATCGTGCATTCGGATCGTGGGTCGCAGTATGCTAGCAAAGCATA
CCGCAATCTACTGAAAGCATACGGTTTTATTGGCAGTATGAGTCGTCTGGGAAATTGTTGGGATAATGCGGTTGCGGAAA
GTTTCTTTGGCAGCCTCAAGCAGGAACGCTGCCAATGGCGGCATTACCAAACCCGCCATGCAGCACAGCAGGATATTTTG
CAGTATATCGCCGTGTTTTATAATAACCAAAGACTGCATTCATACCTGGATTACAAAAGTCCGAATCAATATGAAGCAGA
AGCAGCAAAATCGATAAAAGCAGCTTAA

Protein sequence : 
MCRLLGVSRSAYYDYEQRRCNCPDDLHHRQLLNAVQNIAKSCDYTYGSRRMKRALNALDYRVSRWKARRLMQEAGIQVKH
RKKYKVTTDSNHPLPVFENQLNRQFTVARPDQVYVCDITCIWTQEGWLYLAVVIDLFSRKVVGWSMSSRMKATLVCDALR
MAIWLHRPPPGLIVHSDRGSQYASKAYRNLLKAYGFIGSMSRLGNCWDNAVAESFFGSLKQERCQWRHYQTRHAAQQDIL
QYIAVFYNNQRLHSYLDYKSPNQYEAEAAKSIKAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 6e-42 43
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 7e-42 43
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 7e-42 43
unnamed AAF09022.1 unknown Not tested SHI-O Protein 3e-41 43
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 7e-42 43
unnamed AAF09030.1 unknown Not tested SHI-O Protein 7e-42 43
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 7e-42 43
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 9e-42 43
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 3e-45 43
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-45 43
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 3e-45 43
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 1e-33 43
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 1e-33 43
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 1e-39 42
unnamed AAC31485.1 L0006 Not tested LEE Protein 1e-29 42
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 2e-29 42
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 1e-37 42
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 8e-38 42
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 1e-37 42
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 1e-29 42
Z5089 NP_290241.1 transposase Not tested LEE Protein 2e-29 42
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 1e-36 41
unnamed CAI43898.1 putative transposase Not tested LEE Protein 2e-29 41
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 2e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Neut_0303 YP_746552.1 integrase catalytic subunit VFG1706 Protein 4e-42 43
Neut_0303 YP_746552.1 integrase catalytic subunit VFG1484 Protein 6e-34 43
Neut_0303 YP_746552.1 integrase catalytic subunit VFG0785 Protein 7e-30 42
Neut_0303 YP_746552.1 integrase catalytic subunit VFG1631 Protein 7e-37 41