Gene Information

Name : Neut_1888 (Neut_1888)
Accession : YP_748085.1
Strain : Nitrosomonas eutropha C91
Genome accession: NC_008344
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2003695 - 2004543 bp
Length : 849 bp
Strand : -
Note : PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5204 integrase, catalytic region

DNA sequence : 
TTGCAGGTCGCCCCATCAGGGTATCGGCGATATTCCGCGCAACAGCGTAATCCGGCTTTGCGCAGTGCCCGCGTCCTGCG
TGATGATGAACTGCTGCCGCAGATACAGCGGGTCTGGCAGACCAACATGCAGGTCTATGGTGCCGACAAGGTCTGGCGTC
AGCTTAAGCGTGAAGATGTCCAGGTGGCACGCTGTACGGTCGAACGGCTCATGAAACGGTTAGGGTTGAAAGGTGCCAGG
CGTGGCAAGGTTGTGCGCACCACAGTTCCGGACAAGGCGCTGCCGTGTCCACTGGATCGGGTTAACCGGCAATTCAAGGC
AGATCGTCCGAACCAGTTGTGGGTGTCAGACTTCACCTATGTCTCGACCTGGCAAGGCTGGCTGTATGTGGCTTTCGTCA
TCGATGTATTTGCCCGGCGCATTGTGGGCTGGCAGGTGAGCAGCTCCATGCGCACGGACTTTGTGCTGGATGCCCTGGAA
CAAGCGCTGTATGCCCGGCAACCGGGGCGGATGGATGCCTTGGTACACCATAGCGACAGAGGCTCGCAATATGTCTCCAT
TCGCTATACCGAGCGACTCGCCGAAGCCGGAATAAAACCCTCGGTCGGCAGCAAGGGCGACAGCTACGACAACGCGCTGG
CAGAAACCATCAATGGGCTGTACAAAACAGAATTGATTCACAAGCGCGCCCCCTGGAAAACCAGGGAGGCCGTGGAGCTG
GCAACGCTGGAATGGGTAGCCTGGTTCAACAACCAGCGGCTGCTGGAACCAATCGGTTACATCCCTCCCGCAGAAGCTGA
GGTAAACTACTATAGGCAATTCGCCAGGGAAGCCATTCCGGTGGCTTGA

Protein sequence : 
MQVAPSGYRRYSAQQRNPALRSARVLRDDELLPQIQRVWQTNMQVYGADKVWRQLKREDVQVARCTVERLMKRLGLKGAR
RGKVVRTTVPDKALPCPLDRVNRQFKADRPNQLWVSDFTYVSTWQGWLYVAFVIDVFARRIVGWQVSSSMRTDFVLDALE
QALYARQPGRMDALVHHSDRGSQYVSIRYTERLAEAGIKPSVGSKGDSYDNALAETINGLYKTELIHKRAPWKTREAVEL
ATLEWVAWFNNQRLLEPIGYIPPAEAEVNYYRQFAREAIPVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 6e-62 65
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 5e-62 65
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 3e-58 65
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 6e-70 65
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 7e-73 63
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-73 63
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 3e-73 62
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 3e-73 62
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 3e-73 62
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 2e-74 62
Z1221 NP_286756.1 transposase Not tested TAI Protein 2e-74 62
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-74 62
Z1198 NP_286733.1 transposase Not tested TAI Protein 6e-74 62
Z1638 NP_287141.1 transposase Not tested TAI Protein 6e-74 62
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-74 62
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-74 62
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-74 62
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-74 62
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-50 62
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 3e-74 61
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 4e-74 61
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-71 60
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-52 48
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 1e-35 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Neut_1888 YP_748085.1 integrase catalytic subunit VFG1602 Protein 1e-71 60