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Name : Neut_0116 (Neut_0116) Accession : YP_746369.1 Strain : Nitrosomonas eutropha C91 Genome accession: NC_008344 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 112738 - 114753 bp Length : 2016 bp Strand : - Note : KEGG: rme:Rmet_2298 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; DNA topoisomerase, type IA, zn finger domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA DNA sequence : ATGAGGTTATTTCTGTGCGAGAAGCCTTCCCAGGGCAAAGACATCGGCAAAGTGCTTGGCGCCACGCAGCGCGACAACGG TTGCCTGAAAGGCCCGGGCGTCATCGTGACCTGGTGCATTGGCCATCTGGTCGAGGCGGCGCCGCCAGAAGCTTATGACG CAAATCTCAAACACTGGTCCATCGAACAGTTGCCCATTATTCCCGAGCGCTGGCGTATCGAAGTCAAACCCAAGACCGCC GCGCAATTCAAAGTCGTCAAGCAGTTGCTGGCACAAGCTACCGAGTTGGTGATCGCCACCGACGCGGATCGTGAAGGCGA AATGATCGCCCGTGAAATTGTTGAGCTGTGTGGCTACCGAGGGCCTATTCAACGCCTGTGGCTATCGGCCCTGAATGATG CATCGATCCGCAAGGCATTGGCTGCCCTGAAACCGTCATCTGAGACGCTGCCCATGTACCATTCGGCCTTGGCGCGCTCC CGCGCCGACTGGCTGGTGGGCATGAACCTGAGTCGGCTTTTCACTCTATTGGGTCGGCAGGCTGGCTACGATGGCGTGTT GTCGGTAGGTCGGGTGCAAACGCCCACGTTAAAGCTCGTGGTGGATCGCGACCGTGAAATCAATCAGTTTGTCTCCATCC CATTCTGGGCTATCGACGTAGCGCTCTCAGCAACAGGACAATCTTTCATCGCGCAGTGGCTGGCCCCCGAAGCCTGCACC GACGAGGCGGGAAGGTGCCTGCAGGAGTCCGTGGCACAACAGGCGGCGCAACAATTGCGTGCAAACGGCACCGCTCAGGT CGCGTCCGTCGAAACCGAACGGGTGCGCGAGGGCCCGCCATTGCCCTTCGATCTTGGGACGTTGCAGGAAGTCTGTTCCA AGCAGCTTGGCCTGGATGTGCAGGAAACGCTGGACATTGCCCAGGCGTTGTACGAAACGCATAAGGCCACCACCTATCCA CGCTCGGATTCGGGCTACCTGCCCGAGAGTATGCAGGCCGATGTGCCAGCCGTGCTCGACAGCCTGCTCAGAACCGATCC CGCCTTGCGGCCCGTGATGGAGCAGCTTGATCGCAGACAGCGTTCACGGGCCTGGAACGACAGCAAGGTCACCGCTCACC ATGGCATCATCCCCACGCTGGAACCCGCGAACCTCTCGGCCATGAGCGAGAAGGAGCTGGCCGTTTATCGACTGATCCGT GCCCATTACCTAGCACAGTTTCTACCGCATCATGAATTTGACCGCACCATTGCGCGGCTTTCGTGCGCGGGTCAACATCT TCAGGCCGTAGGCAAACAGATTGTCATCCCAGGATGGCGGCTGGTGCTGGTCGAGCAGCAAGCGGAGGATGCCGACGATG AGGCCGCCCCGCGCAGTCAAGTGTTGCCCGCACTGAACCAAGGCCTGTCCTGCCAGATGAACACCGTTGATCTTAAGGCG CTCAAGACGCTGCCTCCCCGGCCCTACACCCAAGGAGAGCTGGTCAAGGCCATGAAAAGTGTCGCCAAGCTGGTGTCCGA CCCACGCCTGAAGCAGAAGCTCAAGGACACGGTTGGCATCGGCACCGAGGCCACTCGCGCCAATATCATCAACGGGCTGC TGACACGTGGCTATCTGATCAAGAAGGGCCGGGCGATCCGTGCGTCGGAAGCGGCTGGCACGCTCATTGATACGGTTCCC GCGGCCATTGCTGACCCCGGCACGACAGCAGTCTGGGAGCAGGCCCTGGACATGATCGAGGCGGGCGAGCTTACCCATGA CGTCTTCACCGGCAAGCAGTCGGCCTGGATTTCACAGATCATCGCCCAGTACCAGGGCACAGCCATGACGATCAAGGTGC CCCAAGGTCCAGCTTGCCCGCAGTGCGGCTCGGCCACACGCCAACGCACTGGCAAAAATGGTCCGTTCTGGTCATGCTCG CGTTATCCCGAGTGCAAAGGCACCGTGCCGGTTGACTCCGCAACGCCCAAGCGCAGCGCGCCGCGCAAGCGCCGCAGCGC ATCCAAGACATCCTGA Protein sequence : MRLFLCEKPSQGKDIGKVLGATQRDNGCLKGPGVIVTWCIGHLVEAAPPEAYDANLKHWSIEQLPIIPERWRIEVKPKTA AQFKVVKQLLAQATELVIATDADREGEMIAREIVELCGYRGPIQRLWLSALNDASIRKALAALKPSSETLPMYHSALARS RADWLVGMNLSRLFTLLGRQAGYDGVLSVGRVQTPTLKLVVDRDREINQFVSIPFWAIDVALSATGQSFIAQWLAPEACT DEAGRCLQESVAQQAAQQLRANGTAQVASVETERVREGPPLPFDLGTLQEVCSKQLGLDVQETLDIAQALYETHKATTYP RSDSGYLPESMQADVPAVLDSLLRTDPALRPVMEQLDRRQRSRAWNDSKVTAHHGIIPTLEPANLSAMSEKELAVYRLIR AHYLAQFLPHHEFDRTIARLSCAGQHLQAVGKQIVIPGWRLVLVEQQAEDADDEAAPRSQVLPALNQGLSCQMNTVDLKA LKTLPPRPYTQGELVKAMKSVAKLVSDPRLKQKLKDTVGIGTEATRANIINGLLTRGYLIKKGRAIRASEAAGTLIDTVP AAIADPGTTAVWEQALDMIEAGELTHDVFTGKQSAWISQIIAQYQGTAMTIKVPQGPACPQCGSATRQRTGKNGPFWSCS RYPECKGTVPVDSATPKRSAPRKRRSASKTS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 82 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 78 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 66 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 2e-167 | 51 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 3e-167 | 51 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 3e-167 | 51 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 7e-167 | 50 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 5e-165 | 50 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 4e-125 | 42 |
