Gene Information

Name : GbCGDNIH1_0146 (GbCGDNIH1_0146)
Accession : YP_743967.1
Strain : Granulibacter bethesdensis CGDNIH1
Genome accession: NC_008343
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 163551 - 164231 bp
Length : 681 bp
Strand : -
Note : -

DNA sequence : 
ATGCGCATTTTACTTGTTGAAGACGATAAGGACGTAGCCGGCTTCATCGTGAAAGGACTGCGCGAGGCAGGCCATACGGT
AGAGCACCGGGATAACGGACGGGACGGGCTGTTCATGGCCGCCAGCGAGAATTTCGACGCCATCGTGCTGGATCGCATGC
TGCCGGGCGGCATCGATGGTCTGCGCCTGCTGGAAACCCTGCGCAGCCAGGATGTCAATACACCGGTTCTGTTTCTCTCC
GCGCTCAGCGGTGTGGATGAGAGGGTAAAAGGGTTGAAAGCGGGTGGCGATGACTACCTTTCAAAACCCTTCGCCTTTTC
GGAGCTGCTGGCCCGCGTGGAAGCACTGACCCGACGCGGCAAGACCGACGCCCCGACCACCAAGCTGGTGGTTGCCGATC
TGGAAATGGATCTGCTGTCCCGTGGCGTGAAGCGCGGCGGCCAGAAAATAGACCTTCAGCCACGGGAGTTTCGTCTGCTG
GAATTCCTGATGCGCCATGCCGATCAGGTCGTGACCCGCACCATGCTGCTGGAAGGCGTATGGGATTATCATTTCGACCC
ACAGACCAACGTGATCGACGTCCATGTCTCTCGCCTGCGGCAGAAAGTGGACAAGCCCTTTACCGTCAGCCTGATCCATA
CCGTGCGCAACGCCGGCTATATGCTCCGGGCGGATGGCTGA

Protein sequence : 
MRILLVEDDKDVAGFIVKGLREAGHTVEHRDNGRDGLFMAASENFDAIVLDRMLPGGIDGLRLLETLRSQDVNTPVLFLS
ALSGVDERVKGLKAGGDDYLSKPFAFSELLARVEALTRRGKTDAPTTKLVVADLEMDLLSRGVKRGGQKIDLQPREFRLL
EFLMRHADQVVTRTMLLEGVWDYHFDPQTNVIDVHVSRLRQKVDKPFTVSLIHTVRNAGYMLRADG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-44 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-43 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GbCGDNIH1_0146 YP_743967.1 two-component response regulator BAC0638 Protein 1e-44 50
GbCGDNIH1_0146 YP_743967.1 two-component response regulator BAC0347 Protein 3e-48 49
GbCGDNIH1_0146 YP_743967.1 two-component response regulator BAC0111 Protein 2e-51 49
GbCGDNIH1_0146 YP_743967.1 two-component response regulator BAC0125 Protein 6e-49 48
GbCGDNIH1_0146 YP_743967.1 two-component response regulator BAC0083 Protein 1e-49 48
GbCGDNIH1_0146 YP_743967.1 two-component response regulator BAC0308 Protein 7e-46 47
GbCGDNIH1_0146 YP_743967.1 two-component response regulator BAC0197 Protein 2e-44 47
GbCGDNIH1_0146 YP_743967.1 two-component response regulator HE999704.1.gene1528. Protein 3e-30 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GbCGDNIH1_0146 YP_743967.1 two-component response regulator VFG0596 Protein 2e-44 46
GbCGDNIH1_0146 YP_743967.1 two-component response regulator VFG1390 Protein 2e-39 44
GbCGDNIH1_0146 YP_743967.1 two-component response regulator VFG1389 Protein 5e-35 44