|
Name : GbCGDNIH1_1252 (GbCGDNIH1_1252) Accession : YP_745073.1 Strain : Granulibacter bethesdensis CGDNIH1 Genome accession: NC_008343 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1389799 - 1391070 bp Length : 1272 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCACGATATTCGCGCTTTACGCGCCGATCCCGCCGCTTTCGATGCGGCGCTGGGCCGCCGTGGCCTGCCTGCCTCTGC CTCCAGCCTGCTGGCGCTGGATGCCGATCGCCGCATGGCCCAGACCCGGTTGCAGGACTATCAGGCGCGCCGCAACGCAT TGGCCAAAGAGATAGGGCAGGGCAAGCGTCAGGGGATTGATACTTCCATGCTGGAGGCGACCGCTGTCGCCCTGCGTGAT GAGATGGAGGCGCTGGAGGCACGGAGCGCATCGCTGGATGCGGAGCAGAAAAGCCTGTTGGAGCGTCTTCCCAATACTCT GGATGCCGAAGTTCCCACCGGCCCCGATGAGAGTGCCAACGTCATTCTGAAACAGGTGGGCGAGCCGATTTCCCTCCCCT TCTCCGCACGCCAGCATTTCGAACTGGGTGAGGCGCTGGGCATGATGCTGTTCGATGCCGCAGCAAGACTTTCAGGCGCA CGTTTTGTCGTGCTGCGCGGTGCTCTGGCACGGCTGGAACGGGCTCTGGGCCAGTATATGCTCGATTTGCACAGTACGGA GCATGGCTTTACCGAGATGCAGGTGCCGGCTTTGGTGAATGACGCAACGGCATACGGCACCGGCCAGCTTCCGAAATTCA CCGAGGATCTGTTCCGCACCACCGATGGGCGCTGGCTGATCCCGACTGCCGAGGTACCTTTGACCAATCTGGTGGCGGAC AGTGTGGTTGATGAAGCCAGCCTGCCAATGCGCATGACCGCACTGACTGACTGCTTCCGCAGCGAGGCAGGCAGCGCAGG ACGGGATACGCGTGGTATGCTGCGTCAGCACCAGTTCCATAAGGTGGAGATGGTCTGCATCACCAGGCCGGAGGACAGCG ATGCCGAGCATGAGCGTATGACGCGCTGTGCCGAGACGGTGCTGGAAAATCTCGGTCTTGCATATCGGCGTGTTTTTTTA TGCTCGGGCGATACCGGCTTCTCGGCAGCACGGACTTATGATCTGGAGGTCTGGCTGCCGGGGCAGCAAGCATGGCGTGA AATCAGCTCCTGCTCCAACTGCCGCGATTTTCAGGCGCGCCGCATGAGCGCCCGTTATCGTGGTGCGGATGGGAAGGTGG CGGGGGTTCCGCATACGCTTAATGGCTCCGGTGTGGCCGTCGGGCGTGCCCTGATCGCTGTGATGGAGACCTATCAGCGC GAGGATGGCAGCATTGATGTGCCTGCCGTTCTGCGTCCTTATATGGGTGGGCTGGAGCGTATTTCCGCGTGA Protein sequence : MHDIRALRADPAAFDAALGRRGLPASASSLLALDADRRMAQTRLQDYQARRNALAKEIGQGKRQGIDTSMLEATAVALRD EMEALEARSASLDAEQKSLLERLPNTLDAEVPTGPDESANVILKQVGEPISLPFSARQHFELGEALGMMLFDAAARLSGA RFVVLRGALARLERALGQYMLDLHSTEHGFTEMQVPALVNDATAYGTGQLPKFTEDLFRTTDGRWLIPTAEVPLTNLVAD SVVDEASLPMRMTALTDCFRSEAGSAGRDTRGMLRQHQFHKVEMVCITRPEDSDAEHERMTRCAETVLENLGLAYRRVFL CSGDTGFSAARTYDLEVWLPGQQAWREISSCSNCRDFQARRMSARYRGADGKVAGVPHTLNGSGVAVGRALIAVMETYQR EDGSIDVPAVLRPYMGGLERISA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 2e-79 | 50 |
