Gene Information

Name : Neut_2601 (Neut_2601)
Accession : YP_743782.1
Strain :
Genome accession: NC_008342
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 11525 - 12046 bp
Length : 522 bp
Strand : +
Note : PFAM: DNA repair protein RadC; KEGG: rso:RSc2620 hypothetical protein

DNA sequence : 
ATGTCACAACAAATCTTATCTTTTGAAGCTGCTCACGTCGATACCACCCTATACGTTAAAGATCTTGAAGGGCGGTATAC
CGTTGCCAGCGATGAAATGATTTTTACAGCGACTCGCGCGGCTATTGAAAGAAAATACCCGGCAAATACTGCGATGACCA
AACCGGAAATTGCAGCTGACTACTTTAAAAACAAATTAAATGGCTTTGAGCATGAGGTTTTTAGCATCATCTTCCTGAAC
TCTCAGTATAGATTGATCGCGTATCGTGAAATGTTTCAGGGAACATTGACGTGTGCCTCGGTATATCCGAGGGAGGTCGT
CAAGGCCGCTATCAGCTACAACGCTGCTGCCGTTATTTTGGCTCATTGTCACCCCTCAAAAGAAACAGAACCCAGCCAAG
CCGATAAAGCAATCACAAAGCGCTTGAAAGAGGCTTTAGACTTGATTGATGTATGTGTACTTGATCATATTATTGTTGGA
GGCAACACAACCAAATCAATGGCCGAAATGGGATTAGTCTAA

Protein sequence : 
MSQQILSFEAAHVDTTLYVKDLEGRYTVASDEMIFTATRAAIERKYPANTAMTKPEIAADYFKNKLNGFEHEVFSIIFLN
SQYRLIAYREMFQGTLTCASVYPREVVKAAISYNAAAVILAHCHPSKETEPSQADKAITKRLKEALDLIDVCVLDHIIVG
GNTTKSMAEMGLV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 1e-29 48
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-32 47
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 5e-32 47
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-32 47
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 2e-20 46
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 2e-20 45
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 3e-20 45
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 2e-20 45
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 2e-20 45
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 6e-20 45
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 2e-20 45
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 9e-23 44
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 5e-21 43
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 2e-20 43
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 1e-20 43
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 5e-21 43
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 5e-21 43
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 3e-21 43
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-20 43
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 1e-20 43
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-20 43
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 9e-21 43
unnamed AAL08475.1 unknown Not tested SRL Protein 6e-21 43
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 1e-20 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Neut_2601 YP_743782.1 DNA repair protein RadC VFG1119 Protein 1e-32 47
Neut_2601 YP_743782.1 DNA repair protein RadC VFG1678 Protein 8e-21 46
Neut_2601 YP_743782.1 DNA repair protein RadC VFG1617 Protein 1e-20 45
Neut_2601 YP_743782.1 DNA repair protein RadC VFG1528 Protein 2e-21 43
Neut_2601 YP_743782.1 DNA repair protein RadC VFG1066 Protein 2e-21 43
Neut_2601 YP_743782.1 DNA repair protein RadC VFG0660 Protein 3e-21 43