Gene Information

Name : Mlg_0802 (Mlg_0802)
Accession : YP_741646.1
Strain : Alkalilimnicola ehrlichii MLHE-1
Genome accession: NC_008340
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein CapD
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 897885 - 899915 bp
Length : 2031 bp
Strand : -
Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: psb:Psyr

DNA sequence : 
ATGAATAAAGCGTTCCTCATCGATCTGCCACGCCCGGTGAAGCGGTTCGTCATGATCATGGCGGACACGCTCATGCTGCC
CGTGGCCCTGTGGGCGGCCTTCAGCCTGCGCCTGGGGACCCCCGTCCCCGGTGTGCTGCTGGACTACGGGTGGCTGCTGC
TGCTCGTGCCGGCGGTCAGCCTGCCGGTTTTCGCCCTGTTCGGCCTTTACCGCGCGGTGGTCCGTTACATGGGGCTGCAG
GCGATCATTGCGGTGGTGCAGGGGGTGACCCTGTCCGCACTGGTCTTCGGCGCCCTGGTTATGCTGGGCCGGCTGGAGGG
TATTCCCCGCTCCGCTCTGCTGATCTACTGGCTGCTGGCGCTGTTCATGGTGGGCGGGTCGCGCCTGGTGGTGCGCGCTT
GGTTCCAGGCGGCGATCAAACGCCGGGGGACCGAGAAGCCGGTGGTCATCTACGGCGCGGGGACCGGGGGGATTGGCCTG
GCCACCAGCCTGTTCAATGGCCGGCAGTACCGCCCGGTGGCCTTCGTGGATGACAACCCGGCAAAACAGGGCACGGTGAT
CGCCGGGCTGCCCGTGCGCAAACCGGCCGAGCTGGCAGAACTGATCGACCGCAACCGGCTGGAGTATATCCTGCTGGCCA
TGCCGCGGCTGTCGCGGACCCGCCGCCGGGAGATCGTCGCCCAGTTGGAGCCGCTGCCCGCCCACATCCTCACCATCCCC
AGCCTGGCGGACATCGTGGCCAACCGGGCCAGTCCCGACGAGGTGCGGGAGGTGGAGGTGGAGGACCTGCTCGGGCGTGA
TGCCGTGGGCCCGCGGCGGGAGCTGCTCGCCCGCTGCATCCGCGGTAAGACGGTCATGGTCACCGGCGCCGGGGGCTCCA
TCGGCTCCGAGCTTTGCCGGCAGATCCTGCGCGAGCAGCCCACTCAGCTGGTGTTGGTCGAGCGCTCCGAGTTCGCCCTC
TACGCCATCGAGCGCGAGCTCCAGGCTCAGTTGCAGGGGGAGGCCCGGCGCCCCGCCGTCCAGGCCGTCCTGGCCAATGT
CACCGACCTGGCGCGCATGGAAATGCTGATGCACGCCTTCCGCGTCGACACGGTCTATCACGCCGCTGCCTACAAGCACG
TCCCGCTGGTGGAGACCAACGTGCTGGAGGGCATCGATAACAACGTCTTCGGCACCCTGCACACGGCCCTGGCGGCGGTG
GAGGCCGGGGTCCGGTACTTCGTGCTAGTGAGCACCGACAAGGCCGTCCGCCCCACCAATGTCATGGGGGCGAGCAAGCG
CCTGGCCGAACTGGTGCTGCAGGGGTTGGCCCGTCAGCCCGATATCCGCACCCGCTTCTCCATGGTCCGCTTCGGTAATG
TGCTCGGCTCCTCCGGCTCGGTGGTGCCGCTGTTCCGCGAGCAGATCCGCAACGGCGGCCCGATCACGGTCACCCACCCC
GAGGTCACCCGCTATTTCATGACCATCCCCGAGGCCGCCTCGCTGGTCCTGCAGGCGGGATCCATGGCCCACGGCGGCGA
GGTCTTCGTGCTGGACATGGGCGAGCCGGTGCGCATCGTCGACCTGGCCCGGCGCATGATCCGTCTGTCCGGTCTCGAGG
AGCGAAACGCGGAACACCCCGATGGCGACATCGAGATCCATTTCACCGGCCTGCGCCCCGGCGAGAAGTTGTATGAGGAG
CTGCTGCTGGGTGAGGCGGTCACCGAGACCAGCCACCCCATGATCATGCGCGCCCGCGAGGGGCACTTGCCCACCGATAC
CCTGCAAAGCCTGCTAAGCGAGCTGCGCGCGGCCTGCCGGCGCTACAACACCCAGGACGCCCGCAAGCTGATGGCCCAGG
TGGTGGAGGGTTACGAGGCCGCCGGACCCAACTGCGACGTGCTCGGGCGGCAGCTGAACGAGTCGGCCGACGCCGTCGCC
CGAGGCCTGTTCAGGGACGGCGAAGGCCCCTGCCCCATCCGCCGGGCCTACCAGCGTGGCACCACGCCAATAAGCGCCCC
CCAATCAGAAGCCCCATTGGCTAAACGCTGA

Protein sequence : 
MNKAFLIDLPRPVKRFVMIMADTLMLPVALWAAFSLRLGTPVPGVLLDYGWLLLLVPAVSLPVFALFGLYRAVVRYMGLQ
AIIAVVQGVTLSALVFGALVMLGRLEGIPRSALLIYWLLALFMVGGSRLVVRAWFQAAIKRRGTEKPVVIYGAGTGGIGL
ATSLFNGRQYRPVAFVDDNPAKQGTVIAGLPVRKPAELAELIDRNRLEYILLAMPRLSRTRRREIVAQLEPLPAHILTIP
SLADIVANRASPDEVREVEVEDLLGRDAVGPRRELLARCIRGKTVMVTGAGGSIGSELCRQILREQPTQLVLVERSEFAL
YAIERELQAQLQGEARRPAVQAVLANVTDLARMEMLMHAFRVDTVYHAAAYKHVPLVETNVLEGIDNNVFGTLHTALAAV
EAGVRYFVLVSTDKAVRPTNVMGASKRLAELVLQGLARQPDIRTRFSMVRFGNVLGSSGSVVPLFREQIRNGGPITVTHP
EVTRYFMTIPEAASLVLQAGSMAHGGEVFVLDMGEPVRIVDLARRMIRLSGLEERNAEHPDGDIEIHFTGLRPGEKLYEE
LLLGEAVTETSHPMIMRAREGHLPTDTLQSLLSELRAACRRYNTQDARKLMAQVVEGYEAAGPNCDVLGRQLNESADAVA
RGLFRDGEGPCPIRRAYQRGTTPISAPQSEAPLAKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 6e-76 44
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 1e-76 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mlg_0802 YP_741646.1 polysaccharide biosynthesis protein CapD VFG0029 Protein 4e-114 51
Mlg_0802 YP_741646.1 polysaccharide biosynthesis protein CapD VFG1300 Protein 3e-76 44