Gene Information

Name : Mlg_0258 (Mlg_0258)
Accession : YP_741103.1
Strain : Alkalilimnicola ehrlichii MLHE-1
Genome accession: NC_008340
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 290398 - 291753 bp
Length : 1356 bp
Strand : -
Note : PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: hch:HCH_05925 sigma 54-dependent transcriptional activator containing CheY-like receiver domain

DNA sequence : 
ATGGCCGCACCACAAGTGCTCGTGGTGGACGACGAACCGGACATCCGCGACCTGCTGGGCATCACCCTGCGCCGCATGGG
CATCAACTGCCGCACCGCCGCCAGCCTGCGCGAGGCGCGGGACCGGCTGCAGGAACAGGCCTACGATCTCTGCCTGACAG
ACATGCGCCTGCCGGATGGCAACGGCATCGAACTGGTCCGCTACATCCAGAAGCGCTTCCCCGACATGCCCACCGCGGTG
ATCACCGCCTACGGCAATATGGACACCGCCGTGGAGGCCATGAAGGCCGGTGCCTTCGACTTCGTCCCCAAACCGCTGGA
CGTCGACACCCTGCGCCAGGTGGTCAACCAGGCCCTCAAGCTGGGACCGGAAAGCGCCATCGACCGCCGCTCCCGCGACG
TGCTGCTGGGCGACTCCGAGGCCATGCGCCGGATCCGCGGCATGATCGTCAAACTGGCCCGCAGCCAGGCACCGGTCTAC
ATCCAAGGCCCCTCCGGCACCGGCAAGGAGCTGGTCGCCCGCCTGATCCACGACAAGGGCCCGCGCCGTGACGGCCCCTT
CGTGCCCGTCAACTGTGGCGCCATCCCCTCCGAGCTGATGGAGTCGGAGTTCTTCGGCCACAAAAAGGGCGCCTTCACCG
GAGCCCACGCCGACCACAAGGGGCTGTTCCAGACCGCCGAAGGCGGCACCCTGTTTCTGGATGAGGTGGCCGAGCTGCCC
CTGCCTATGCAGGTCAAACTACTCCGGGCCATTCAGGAGAAACGGGTGCGCCCGGTGGGGGCCAGCAAGGAGGTCCCGGT
GGACGTACGCATCCTTTCCGCCACCCACCAGGATCTGGCCCGCCGGGTGGCGGAAGGCGCCTTCCGCGAGGACCTCTACT
ACCGGCTGAACGTCATCCCGCTCTCCATCCCACCCCTGCGCGAGCGCCCCGAAGACATCCCCCCGCTGATCGATCACCTG
CTGGAAAAGATGGTGGGCGACGACCCGGAACTACGACCGCGCCTGACCACCGACGCCCTGCGCGCCCTGCAGCGCCACCC
CTTTCGGGGCAATGTGCGGGAGTTGGAGAACATCCTGGAACGGGCGCTGACGCTGGCCGACGAAGGCGTCATCGACGTGG
AGGACCTGCACCTGCCGGACGGCGACGCCTCCGCCCCGGCACAGCAGAACAGTGAGTTGGCGATCCCCGAACCGGATGAG
GGCTTCGAGCTGGAAGGCTACCTGCAGGACCTGGAGCGCACCGCCATCCAGCGGGCCCTGGCCAAGACCAACGGCAATAA
GACCGCCGCCGCCAACCTGCTGGGCATCAGCTTCCGCTCCCTGCGCTACAAGCTGAAAAAGCTGGAAATGGAGTAG

Protein sequence : 
MAAPQVLVVDDEPDIRDLLGITLRRMGINCRTAASLREARDRLQEQAYDLCLTDMRLPDGNGIELVRYIQKRFPDMPTAV
ITAYGNMDTAVEAMKAGAFDFVPKPLDVDTLRQVVNQALKLGPESAIDRRSRDVLLGDSEAMRRIRGMIVKLARSQAPVY
IQGPSGTGKELVARLIHDKGPRRDGPFVPVNCGAIPSELMESEFFGHKKGAFTGAHADHKGLFQTAEGGTLFLDEVAELP
LPMQVKLLRAIQEKRVRPVGASKEVPVDVRILSATHQDLARRVAEGAFREDLYYRLNVIPLSIPPLRERPEDIPPLIDHL
LEKMVGDDPELRPRLTTDALRALQRHPFRGNVRELENILERALTLADEGVIDVEDLHLPDGDASAPAQQNSELAIPEPDE
GFELEGYLQDLERTAIQRALAKTNGNKTAAANLLGISFRSLRYKLKKLEME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 6e-97 49
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 6e-97 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mlg_0258 YP_741103.1 Fis family transcriptional regulator BAC0089 Protein 2e-71 44
Mlg_0258 YP_741103.1 Fis family transcriptional regulator BAC0467 Protein 2e-71 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mlg_0258 YP_741103.1 Fis family transcriptional regulator VFG1214 Protein 2e-123 60
Mlg_0258 YP_741103.1 Fis family transcriptional regulator VFG1249 Protein 2e-68 43
Mlg_0258 YP_741103.1 Fis family transcriptional regulator VFG0116 Protein 2e-57 42