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Name : Shewmr7_3605 (Shewmr7_3605) Accession : YP_739642.1 Strain : Shewanella sp. MR-7 Genome accession: NC_008322 Putative virulence/resistance : Virulence Product : type IV-A pilus assembly ATPase PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 4286399 - 4288108 bp Length : 1710 bp Strand : + Note : TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: son:SO0416 type IV pilus biogenesis protein PilB DNA sequence : ATGCCAACATCAGGTCTTCATTTAGGTTTATCCACTCTTTTTATCCGTAAAGGGCTGCTAAATGAAGAGCAGATGGCGAA TGCCATCACTAAATCCCGTCAGACTAAACAGACTTTAGTGACTACCTTAGTCCAAACCCAACTGATTTCCGCTCGTTCGA TTGCAGAGCTTTGCTATGAAGAGTACGGCACCCCACTACTCGATTTAGCTGAATTTGATATTAGCGCCATTCCAGAAGAA TTTATTAATAAAAAACTGATTGAAAAACACCGCTGTCTACCGCTCTTTAAACGCGGTAATCGTCTCTATATCGCCACCTC AGATCCAACTAATATTGCTGCACTTGAAGAGTTTCAATTTAGTGCAGGCCTACATGCCGAAGCCATCCTAGTTGAAGAAG ATAAACTCGCTAAAGCCCTTGAAAAGGTATTAGAAGAAGATATTACGGGCCTCGATCTAGGCGGTATGGACGAGGCGGCT TTAGCGGGTATTGAGATTGCTGATACCGATAAGCGACAAGAAGAAAATACAGGTGATGGCAGTGATGATGCACCAATCGT CATTTATATCAATAAGATATTAACCGATGCCATACGTAAAGGGGCATCAGATCTTCACTTTGAGCCCTATGAAAAACGCT ACCGCATTCGTTTCCGTATCGATGGTATTTTGCATGAAGTCTCCGAGCCGCCGATTAGCCTAGCAGGGCGTTTATCTGCT CGTTTAAAGGTGATGTCGAAACTCGATATTGCCGAGCGCCGCGTCCCTCAGGATGGACGGATTAAGATGAAGCTGTCCCG CACTAAGTCCATCGACTTTCGGGTGAGCACGCTGCCGACGCTCTGGGGCGAAAAAATTGTAATGCGGATATTAGACTCCT CCTCCGCACAGCTCGGCATTGAAAAACTGGGTTATGAACCTGACCAAGAAAAGCTCTACCTTGAGATGCTAGCTAAACCC CAAGGAATGATCTTAGTCACAGGCCCAACGGGTTCGGGTAAAACCGTTTCACTTTATACAGGCTTAAATATCCTCAATAC CGCCGAGCGCAATATCTCTACCGCCGAAGATCCGGTAGAAATTAACCTTGAAGGTGTCAACCAAGTCCATATTAATTTAA AAGCGGGTTTAACCTTTGCCTCGGCACTGCGCTCCTTTTTGCGTCAAGACCCCGATGTGGTAATGGTGGGTGAGATCCGT GACCTTGAGACCGCCGAAATTGCTATTAAGGCTGCACAAACTGGCCACTTAGTATTATCCACCCTGCACACAAACTCGGC GGCGGAAACCTTAACCCGTTTAATCAATATGGGTGTACCTGGCTATAATATCGCCAGTTCGGTGAATCTTATTATTGCTC AGCGACTTGCAAGACGGCTTTGCACTGAATGCAAGCAACCCGAACAAATTCCTGAACATGAGTTACAACGTTTAGGCTTT ACCGATGAACAAATAACTCAAGGATTTACCACCTATAAACCTGTAGGTTGTGAGCATTGTTCTGGCGGATATAAAGGACG GGTCGGTATTTACGAAGTAATGAAAATGTCCGATGAAATCGCCCGCACTATTATGGAAGGCGGTAATTCATTACAAATTG CCGAGCAAGCCAAAGCACAGGGGATGCGCGATCTGCGTCAATCTGGCCTACTTAAAGTGATCCAAGGGGTAACCAGTATT GCCGAAGTGAACCGAGTCACCAGCTTTTAA Protein sequence : MPTSGLHLGLSTLFIRKGLLNEEQMANAITKSRQTKQTLVTTLVQTQLISARSIAELCYEEYGTPLLDLAEFDISAIPEE FINKKLIEKHRCLPLFKRGNRLYIATSDPTNIAALEEFQFSAGLHAEAILVEEDKLAKALEKVLEEDITGLDLGGMDEAA LAGIEIADTDKRQEENTGDGSDDAPIVIYINKILTDAIRKGASDLHFEPYEKRYRIRFRIDGILHEVSEPPISLAGRLSA RLKVMSKLDIAERRVPQDGRIKMKLSRTKSIDFRVSTLPTLWGEKIVMRILDSSSAQLGIEKLGYEPDQEKLYLEMLAKP QGMILVTGPTGSGKTVSLYTGLNILNTAERNISTAEDPVEINLEGVNQVHINLKAGLTFASALRSFLRQDPDVVMVGEIR DLETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLINMGVPGYNIASSVNLIIAQRLARRLCTECKQPEQIPEHELQRLGF TDEQITQGFTTYKPVGCEHCSGGYKGRVGIYEVMKMSDEIARTIMEGGNSLQIAEQAKAQGMRDLRQSGLLKVIQGVTSI AEVNRVTSF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-87 | 44 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-87 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shewmr7_3605 | YP_739642.1 | type IV-A pilus assembly ATPase PilB | VFG0112 | Protein | 2e-171 | 64 |
| Shewmr7_3605 | YP_739642.1 | type IV-A pilus assembly ATPase PilB | VFG1880 | Protein | 9e-153 | 60 |
| Shewmr7_3605 | YP_739642.1 | type IV-A pilus assembly ATPase PilB | VFG0233 | Protein | 1e-127 | 52 |
| Shewmr7_3605 | YP_739642.1 | type IV-A pilus assembly ATPase PilB | VFG1876 | Protein | 1e-85 | 47 |
| Shewmr7_3605 | YP_739642.1 | type IV-A pilus assembly ATPase PilB | VFG0182 | Protein | 8e-87 | 47 |
| Shewmr7_3605 | YP_739642.1 | type IV-A pilus assembly ATPase PilB | VFG2048 | Protein | 2e-87 | 44 |
