Gene Information

Name : Shewmr7_3228 (Shewmr7_3228)
Accession : YP_739268.1
Strain : Shewanella sp. MR-7
Genome accession: NC_008322
Putative virulence/resistance : Unknown
Product : tyrosine recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 3821705 - 3822607 bp
Length : 903 bp
Strand : -
Note : TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO0950 integrase/recombinase XerD

DNA sequence :
GTGGCTAAAACCTATCAGTGCGATCCGCTTATCGATGCCTTTCTCGATGATCTTTGGTCCAGCAAGGGCTTAAGTGATAA
CACCTTGAGTGCCTATCGCACCGATTTACGCCATTTTGACCGCTATCAGCAGAGCCAAGGCCTGCGGTTAATCGAGGTGG
GGCAAGCCGATGTGCGCGCCTATTTAGCCTACCGAGTCCAACAACAATTTGCCCGCACCAGTAGCGCACGTCTACTTAGC
AGTTTACGGCGCTTTTACACTTATTTATTGCAAACCAAGCAGATTGCTGGCGATCCTATGGCGCTGATCGAATCGCCCAA
ATTGAGTCGGCAATTGCCAGATTCCTTAAGTGAGTCACAGGTCGATAGATTGCTGGCCGAGCCCAATGTGGACGACCCAG
TTGAGTGCCGTGATAAAGCCATGCTTGAACTCTTATACGCCACTGGATTGCGGGTGAGTGAACTGGTGGGGCTCACTATG
GAACAGATGAGTTTGCGCCAAGGTTTAGTACGGATTGTGGGTAAGGGCGGTAAAGAGCGGTTAGTGCCCATGGGCGAGCT
GGCCATTACCGAGGTTGAACGCTACTTAAGCTTTGCGCGCCACGAGCTCTTGGGCAATATTCAGTCCGATGTGGTATTTC
CATCTAAGCGCTCGCAGATGATGACGAGGCAAACCTTTTGGCATCGGATCAAGCTCTATGCGAGCCGCGCCGGCATCGAA
ACTGAACTCTCACCCCATACTCTGCGCCATGCCTTTGCCACCCACTTACTCAACCATGGCGCCGACCTTAGGGTGGTACA
ATTACTCTTAGGTCACAGTGACTTATCGACGACTCAAATTTATACCCATGTGGCGCGAGCGAGATTACAAGAGTTGCACC
AACAGCATCATCCTCGTGGTTAA

Protein sequence :
MAKTYQCDPLIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQQSQGLRLIEVGQADVRAYLAYRVQQQFARTSSARLLS
SLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRLLAEPNVDDPVECRDKAMLELLYATGLRVSELVGLTM
EQMSLRQGLVRIVGKGGKERLVPMGELAITEVERYLSFARHELLGNIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIE
TELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 2e-55 57
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 2e-55 57