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Name : lysS (Shewmr7_3196) Accession : YP_739237.1 Strain : Shewanella sp. MR-7 Genome accession: NC_008322 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 3780865 - 3782367 bp Length : 1503 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACTGAACAAGTACAAGATGAAAACAAACTGATTGCCGAGCGTCGTGCCAAGCTAGAAAGCATTCGCCCGAACTGCAG CGCTAATGCTCACCCTAATACTTTCCGTCGCACCCACAAAGCGGCTGAGTTGCAGGAAAAATACGGTCAAAACACTAAGG AAGAACTCGAAGCCTTAGGTTTTAAAACCAGCATCGCTGGCCGTATCATGGCAAAACGTGGCCCATTCCTGGTGATCCAA GACGTGTCTGGTCGTATCCAAGCTTACGCTGAAAAGGGCGTTCAAGCGGATCTGAAAGACCGTTACCAAGGTTTGGATAT CGGTGACATCATCGGCGTAACCGGTCAGTTACACTTGTCTGGTAAAGGCGATCTGTACGTGAACATGGAAGAGTACCAAC TGCTGACCAAAGCACTGCGTCCTCTGCCAGAAAAATTCCACGGCCTGACCGACCAAGAAACTCGTTACCGCCAACGTTAT GTGGACTTAATCGTTAACGAAGAATCTCGTCAAGCCTTCGTCATGCGTTCAAAAGTGGTTGCAGCTATCCGTAACTTCAT GATCAAAAAAGAGTTCATGGAAGTTGAAACCCCAATGATGCACGTGATCCCAGGCGGCGCTTCAGCCCGTCCATTTATCA CTCACCACAATGCGCTGGACATGCCAATGTACCTGCGTATCGCGCCAGAGTTATACCTCAAGCGTTTAGTGGTAGGTGGT TTTGAGCGCGTGTTCGAAATCAACCGTAACTTCCGTAACGAAGGTCTGTCGCCACGCCATAACCCAGAATTCACTATGAT GGAATTCTATATGGCCTATGCAGACTACAAAGATCTGATGGACTTAACCGAAGAACTGTTAAGCTCTATCGCGATTGAAC TGTTAGGCAGCGCGCAAATGCCATACGGCGAGCACACTGTTGATTTCGGTGGCCCATATGCCCGTTTAAGCATGTTAGAA GCGATTCAGAAGTACAATCCTGACAACGCAACTATCCAAGCCATGACCTACGAGCAAGTGAAAGATCTTGAATTCATGCG TGAACTGGCTATCAGCCTAGGTATCAAGATCGAGAAGTTCTGGACCTGTGGTCAGCTATTAGAAGAAATCTTCGGTGAAA CCGCTGAATGGCAGTTAATGCAACCGACTTTCATCACAGGCTACCCAGCGGACATTTCGCCACTGGCACGTCGTAACGAT GACAATCACTTCATCACTGACCGTTTCGAATTCTTCATCGGTGGCCGTGAAGTGGCTAACGGTTTCAGCGAGTTAAACGA TGCTGAAGACCAAGACAGCCGCTTTAAGGCGCAGGTTGATGCGAAAGACGCAGGTGACGACGAAGCCATGTTCTACGATG CAGACTACATCACTGCACTGGAACACGGTTTACCACCAACAGCGGGTCAAGGTATCGGTATCGACCGTTTAGTGATGCTA TTCACTAACACTCATACTATCCGTGACGTGATCCTGTTCCCAGCGATGCGCCCACAGGCCTAA Protein sequence : MTEQVQDENKLIAERRAKLESIRPNCSANAHPNTFRRTHKAAELQEKYGQNTKEELEALGFKTSIAGRIMAKRGPFLVIQ DVSGRIQAYAEKGVQADLKDRYQGLDIGDIIGVTGQLHLSGKGDLYVNMEEYQLLTKALRPLPEKFHGLTDQETRYRQRY VDLIVNEESRQAFVMRSKVVAAIRNFMIKKEFMEVETPMMHVIPGGASARPFITHHNALDMPMYLRIAPELYLKRLVVGG FERVFEINRNFRNEGLSPRHNPEFTMMEFYMAYADYKDLMDLTEELLSSIAIELLGSAQMPYGEHTVDFGGPYARLSMLE AIQKYNPDNATIQAMTYEQVKDLEFMRELAISLGIKIEKFWTCGQLLEEIFGETAEWQLMQPTFITGYPADISPLARRND DNHFITDRFEFFIGGREVANGFSELNDAEDQDSRFKAQVDAKDAGDDEAMFYDADYITALEHGLPPTAGQGIGIDRLVML FTNTHTIRDVILFPAMRPQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-130 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_739237.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-130 | 57 |
