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Name : smpB (Shewmr7_2854) Accession : YP_738895.1 Strain : Shewanella sp. MR-7 Genome accession: NC_008322 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 3387820 - 3388311 bp Length : 492 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGTAAAGAAAAACTCAAAAAAAGCCGCGCCTGCGACGATCGCACGTAATAAGCGCGCAACCTTCGAATACCGTTTCGA AGAAAAAATGGAAGCCGGCCTGTCCCTCATGGGATGGGAAGTGAAGTCTATCCGCATGGGTAAAGTGAACCTATCGGACT GCTACGTCTTCTTAAAAAATGGTGAAGCCTTTATGCACGGCTGTACCATTATTCCGCTCAATACCGCCTCCACCCATGTG GTGTGCGACCCGATTCGACTGAAGAAATTGCTCTTAAGTCGTAAAGAGTTAGACAAATTAGCCGGTCTTGTTGAGCGCCA AGGCTACTCGATTATCCCTATCTCCATGTACTGGCGTAAAGGGGCTTGGGTCAAAGTGGAAATTGGCCTAGGTAAAGGTA AAAAAGACCACGACAAGCGTGAAGATACTAAAGCGCGTGAGTGGGAAGTGGAAAAAGCCCGTGTAATGAAAAAGGAAAAA ACGCGCGGATAA Protein sequence : MVKKNSKKAAPATIARNKRATFEYRFEEKMEAGLSLMGWEVKSIRMGKVNLSDCYVFLKNGEAFMHGCTIIPLNTASTHV VCDPIRLKKLLLSRKELDKLAGLVERQGYSIIPISMYWRKGAWVKVEIGLGKGKKDHDKREDTKAREWEVEKARVMKKEK TRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 5e-33 | 57 |
