Gene Information

Name : Shewmr7_2132 (Shewmr7_2132)
Accession : YP_738177.1
Strain : Shewanella sp. MR-7
Genome accession: NC_008322
Putative virulence/resistance : Unknown
Product : integron integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 2519672 - 2520631 bp
Length : 960 bp
Strand : +
Note : TIGRFAM: integron integrase; PFAM: phage integrase family protein; KEGG: son:SO2037 site-specific recombinase, phage integrase family

DNA sequence : 
ATGAGTCTAAAAAGCCCATTTCTAAGCAGCCTTCAAGAAGAAATGCGTATGCGTGGTTACAGTATTAGAACAGAAACAAC
CTATCTGTATTGGATCAAGGCCTTTATTAACTTTCACGGCAAGCGTCACCCTGAAACAATGGGAACGGAAGAAGTTACAC
AATTTTTAACCTTCCTTGCCAATCAACGAAATGTGGCCATCAACACACAAAAAATTGCACTTAACGCGTTAGCCTATTTG
TATCAGAAGCATTTGCACCATGAGCTTGGGGATTTAGGTTTTTGCTATGCCACTAAACAGAGACATTTACCGACAGTGTT
ATCCCCATCAGAAATCTCACTAATACTAAATGAACTTGATGGCCGCGATAAGCTAATAATAGAACTACTCTATGGTAGTG
GACTAAGAGTGTCAGAATGCCTCAGGTTACGTATCCAAGATATTGATATTGAGAGAGCTTCGCTGAGCGTTAGAGACGGT
AAAGGACATAAAGATAGGCAAACCATCCTCAGCCATAGATGCGCAGAAAAGCTCACTACATATATTGAAAAGGCTATTAA
GACTCAACAGAATGACAACCTTCGAGGGATAGGTCCATCTCTGCCAAATGCATTAGAACGCAAGTATCCCAATGCGTTTA
GGCAACACGGATGGATGTTTATTTTCCCTTCTAGTACAACCTGTATCAATCCTTATACAGGAACACTTTGCAGGCATCAT
TTACATCAAAGTGTTATTCGTAAAGCGCTCGGGAATGCCGTGCGTAATATTCAAATGAATAAACGCGTCACCTGCCATAC
GTTTAGGCATAGCTTCGCAACCCATTTGCTTCAAGCTGGTCGTGATATAAGAAGTGTTCAAGAGTTACTGGGCCACAACG
ACGTTAGTACCACACAAATCTATACACATGTACTTGGCCAACATTTTGCGGGGATAACTTGCCCGTTAGACACATTATAA

Protein sequence : 
MSLKSPFLSSLQEEMRMRGYSIRTETTYLYWIKAFINFHGKRHPETMGTEEVTQFLTFLANQRNVAINTQKIALNALAYL
YQKHLHHELGDLGFCYATKQRHLPTVLSPSEISLILNELDGRDKLIIELLYGSGLRVSECLRLRIQDIDIERASLSVRDG
KGHKDRQTILSHRCAEKLTTYIEKAIKTQQNDNLRGIGPSLPNALERKYPNAFRQHGWMFIFPSSTTCINPYTGTLCRHH
LHQSVIRKALGNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQHFAGITCPLDTL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 5e-62 45
intI YP_001844881.1 integrase Not tested AbaR20 Protein 2e-62 45
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 1e-62 45
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 1e-62 45
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 5e-62 45
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 2e-62 45
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 1e-62 45
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 1e-62 45
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 5e-62 45
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 2e-62 45
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 1e-62 45
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 2e-62 45
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 1e-62 45
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 5e-62 45
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 1e-62 45
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 1e-62 45
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 5e-62 45
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 1e-62 45
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 5e-62 45
intI1 AAK02045.1 integrase Not tested SGI1 Protein 5e-62 45
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 1e-62 45
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 3e-62 45
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 5e-62 45
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 1e-62 45
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 1e-62 45
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 1e-43 44
int1 YP_005160012.1 integrase Not tested Not named Protein 6e-50 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shewmr7_2132 YP_738177.1 integron integrase VFG1028 Protein 1e-62 45