Gene Information

Name : Shewmr7_1782 (Shewmr7_1782)
Accession : YP_737832.1
Strain : Shewanella sp. MR-7
Genome accession: NC_008322
Putative virulence/resistance : Virulence
Product : N-6 DNA methylase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG0286
EC number : -
Position : 2100123 - 2102612 bp
Length : 2490 bp
Strand : +
Note : PFAM: N-6 DNA methylase; KEGG: vch:VC1769 DNA methylase HsdM, putative

DNA sequence :
ATGGATCATAGTGTACATAACAAGCTCATCTCATTTATTTGGAACATTGCCGACGACTGTTTACGTGATGTGTACGTTCG
CGGTAAGTACCGCGATGTGATTTTACCTATGGTGGTATTGCGACGTTTAGATACATTACTAGAACCCACCAAAGAAGCCG
TTCTAGAAGAGGTAAAATTCCAAAAAGAAGAGATGCAAGCCACAGAGCTTGATGATGAACCATTAAAGGCTGCCAGTGGT
TATGTCTTTTACAATACATCTAAATGGACGCTGAAATCCCTGTTCAACACCGCGACTAATAATCAGCAAATATTACTCGC
CAACTTTGAAGAGTACCTACTTGGCTTTAGCGATAATGTTAAAGAGATCATTGAATGCTTTAACCTCAAGTCGCAAATTC
GTCATATGGCCTCCAAGCAAGTCCTTCTTGATGTCGTCGAAAAGTTTGTTTCCCCCTACATAAACCTAACTCATGAAACG
GTCGAAGACCCAGATGGCAACAAGATGCCAGCCCTCACCAACCTGGGTATGGGTTACGTGTTTGAAGAGTTGATCCGCAA
GTTCAACGAAGAAAACAACGAAGAAGCAGGCGAACACTTTACGCCACGTGAAGTGATTGAATTGATGACACACCTGGTGT
TTGACCCTGTGAAAGACCAGTTGCCGCTTACCATGACAGTGTATGACCCTGCGTGTGGCAGCGGTGGTATGCTCACTGAA
TCTCAAAACTTCATTGAAGAGAAATACCCAAACGACCCGTCCGTAAAAACTAAGCGAGATGTTTACCTTTACGGCAAAGA
GATCAATGACGAGACCTACGCGATTTGTAAATCGGACATGATGATCAAAGGTAACAACCCTGAGAACATCAAAGTAGGCT
CAACCTTGTCTACCGACGAGTTTGCGGCTTCACGTTTTGACTTTATGTTGTCTAATCCGCCATACGGTAAGAGTTGGGCG
TCTGAACAGAAGCATATTAAAGACGGTAGTGATGTGATTGACCCACGTTTTAAGGTTAGCCTGAAAGACTATTGGGGAAA
TCTCGAAGTGGTAGATGCCACGCCACGTTCAAGTGATGGCCAGCTGCTCTTCTTAATGGAAATGGTCAACAAGATGAAAG
ATCCGAGCGTAAGCCCATTAGGCAGCCGGATTGCCTCTGTTCATAATGGCTCTTCGCTCTTTACCGGTGATGCGGGCGGT
GGCGAAAGTAACATTCGTCGCTTTATCATTGAAAACGACATGCTAGATGCCATTGTTCAGTTACCTAATAACCTGTTCTA
TAACACCGGTATTACCACTTACATTTGGGTGTTGAACAACAATAAACCTGAGGCACGCAAAGGTAAGGTGCAACTGATTG
ATGCCAGCTTGCTATACCGTAAGTTGCGTAAGAACTTAGGTAATAAAAACTGCGAATTTGCACCTGAGCACATCACGGAA
ATTACCGATACTTACCTCGCGTGTGTGGACGTTGAAAGAGCACTTGATGCAACTGCTCCTGAAGGCATGGGCGATCCTGT
TGGCATCGCCAGTAAGGTGTTTAGTAATGAAGACTTTGGCTACTACAAAGTTACTATCGAGCGCCCAGATCGCCGCAGAG
CCAAGTTCACTCAAGAGGCGATAGCCCCACTGCGTTTTGATAAGCAGCTCAGTGAAGTGATGGAGTACGTGTACGCAGAG
CACGGCGAACGTGTTTACGAAAAAACTGCCCCTAGCAATAACAAAGAGGGTGATGAAAAGAAAAGGAGCTTCTTAAAATC
CATTGAGAAGGACATTCTTTCTTGGTGTGAAGAGAACGATATTAGCCTCAACGCCAAGGCTAAAGCCAAACTGCTTGATG
TGAAACACTGGCTGGCGCTAAAAGCATTGCTTGAAACAGCAGAAACGCTGATGGCTGACATAGGTAGCATTGAATTTGAT
GACTTCAATAGCTTTAAAACCCAAGTTGATAAATCGCTAAAAACCCATGCCATTAAGCTTTCAGCTCCTGAGAAAAATGC
CATCCTGAACGTGGTGAGCTGGTATGACGAAAGTGCTAAGAAAGTGGTTAAAAAGGTAGTTAAATTAACAGGTGATAAAT
TAAACGACCTGCTGGAGCGCTATGAGTGTGAAGTCGCTGACCTGCCAGATTTTGGTTATTACCCCGTTCCTACAACAGAA
GGCGGCAAAAAAAACGAGTTCATCACTTACGAGACCAATTCAGACCTGCGTGACACAGAATCTGTTCCATTGAAGCAAAG
CATCTACCAGTACTTCCTAGATGAGGTGAAGCCTCATGTTGATGAAGCATGGATAAACCTAGATACGGTAAAAATTGGCT
ATGAAATCAGCTTCAATAAGTATTTCTACCGTCATAAACCACTGCGTAGTTTAATCGATGTCGCAACCGACATTATCAAC
CTAGAACAAAAAGCCGAAGGTCTGATTGCGCAAATCCTTGGAATAGAGAGCTTGGGCGTCAAAGTGGCGGAAGTTCAGGG
AGAAGCGTAA

Protein sequence :
MDHSVHNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEMQATELDDEPLKAASG
YVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIECFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHET
VEDPDGNKMPALTNLGMGYVFEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQLPLTMTVYDPACGSGGMLTE
SQNFIEEKYPNDPSVKTKRDVYLYGKEINDETYAICKSDMMIKGNNPENIKVGSTLSTDEFAASRFDFMLSNPPYGKSWA
SEQKHIKDGSDVIDPRFKVSLKDYWGNLEVVDATPRSSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGG
GESNIRRFIIENDMLDAIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPEHITE
ITDTYLACVDVERALDATAPEGMGDPVGIASKVFSNEDFGYYKVTIERPDRRRAKFTQEAIAPLRFDKQLSEVMEYVYAE
HGERVYEKTAPSNNKEGDEKKRSFLKSIEKDILSWCEENDISLNAKAKAKLLDVKHWLALKALLETAETLMADIGSIEFD
DFNSFKTQVDKSLKTHAIKLSAPEKNAILNVVSWYDESAKKVVKKVVKLTGDKLNDLLERYECEVADLPDFGYYPVPTTE
GGKKNEFITYETNSDLRDTESVPLKQSIYQYFLDEVKPHVDEAWINLDTVKIGYEISFNKYFYRHKPLRSLIDVATDIIN
LEQKAEGLIAQILGIESLGVKVAEVQGEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1769 NP_231404.1 DNA methylase HsdM Not tested VPI-2 Protein 0.0 76
VC0395_A1367 YP_001217310.1 DNA methylase HsdM Not tested VPI-2 Protein 0.0 76
VPI2_0017c ACA01834.1 DNA methylase HsdM Not tested VPI-2 Protein 0.0 76

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shewmr7_1782 YP_737832.1 N-6 DNA methylase VFG1102 Protein 0.0 76