Gene Information

Name : Shewmr7_1777 (Shewmr7_1777)
Accession : YP_737827.1
Strain : Shewanella sp. MR-7
Genome accession: NC_008322
Putative virulence/resistance : Virulence
Product : phage transcriptional regulator, AlpA
Function : -
COG functional category : K : Transcription
COG ID : COG3311
EC number : -
Position : 2095728 - 2095949 bp
Length : 222 bp
Strand : +
Note : PFAM: Prophage CP4-57 regulatory; KEGG: vvy:VV0515 predicted transcriptional regulator

DNA sequence : 
ATGACACTAAACATAAAGCTAATTCGAATAAAAGACGTGATTGACACCACAGGTTTAGCCCGTTCAACCATTTACAAGTA
TGTCGATAAAGGTATTTTCCCCAAAGCAGTGAAACTGGGCAGTAGATCAGTTGCATGGGTAGAAAGTGAAGTACAAGAGT
GGATATTAGAAAGGATAGCACAGAGGGATGGAGCGGCCTCAAATCGTTCCTCTTCTTGTTAA

Protein sequence : 
MTLNIKLIRIKDVIDTTGLARSTIYKYVDKGIFPKAVKLGSRSVAWVESEVQEWILERIAQRDGAASNRSSSC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 4e-15 55
VPI2_0041 ACA01856.1 predicted transcriptional regulator Not tested VPI-2 Protein 3e-15 55
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 4e-15 55
VC0497 NP_230151.1 transcriptional regulator Not tested VSP-2 Protein 3e-13 54
PMI2608 YP_002152324.1 prophage regulatory protein Not tested Not named Protein 1e-09 50
unnamed CAB46594.1 DNA-binding protein Not tested HPI Protein 3e-11 48
unnamed CAA21398.1 - Not tested HPI Protein 4e-11 48
unnamed CAD33739.1 hypothetical protein Not tested PAI I 536 Protein 1e-06 41
c5192 NP_757040.1 hypothetical protein Not tested PAI II CFT073 Protein 2e-06 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shewmr7_1777 YP_737827.1 phage transcriptional regulator, AlpA VFG1141 Protein 1e-15 55
Shewmr7_1777 YP_737827.1 phage transcriptional regulator, AlpA VFG1480 Protein 4e-07 41