|
Name : Shewmr7_0152 (Shewmr7_0152) Accession : YP_736215.1 Strain : Shewanella sp. MR-7 Genome accession: NC_008322 Putative virulence/resistance : Virulence Product : type II secretion system protein E (GspE) Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 175350 - 176915 bp Length : 1566 bp Strand : + Note : KEGG: son:SO0167 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase DNA sequence : ATGAGTGAAATACAAGTAACCCAAGTCGAGGATTTAAGCCTAGTTTCTAACGAACTAGGGCTTGAAGCCGAAGGTGATGA GGTATTTCGCTCCAGCAGCAAAGAGCGTTTACCCTTTGCCTTTGCCCACCGCCATGAGGTGATTTTAGCCTTTGGCGAGG ATGGCGCCTTGAGCCTGTTTTATACCGCCAAAACTCCGTTAGCGGCCATGCTCGAAGCGCGCCGTTACTCGGGTGTGGAT TTGCCGCTGGTATTGCTCGAACCGGGCAAGTTTGAGGCGAAATTAACTCAGGCCTATCAAGCCAACTCATCCGAAGCGCA GCAGCTGATGGAAGATATTGGCAACGAGATGGATTTATTCACCCTCGCCGAAGAGCTGCCGCAAACCGAAGATCTGCTCG AAGGCGATGATGATGCGCCTATTATCAAGCTGATTAACGCCTTGTTATCTGAAGCGATTAAAGAAGAAGCCTCGGATATC CATATCGAAACCTACGAGAAGCAATTAGTCGTGCGTTTCCGTATCGACGGTGTGCTGAAGGAAGTGCTTAAACCGAATCG TAAGCTGTCATCCTTGTTGGTGTCGCGGATTAAGGTGATGGCGCGTCTCGATATCGCCGAGAAACGTGTGCCACAAGACG GCCGTATTTCGCTGCGGATTGCGGGTCGTGCGGTGGATGTGCGGGTATCGACCATGCCATCGAGCCATGGCGAGCGTGTG GTGCTGCGTCTGTTAGATAAAAACGCCGGTAATCTGGATTTAAAACAATTGGGTATGACCGACAGTATCCGTGCCAAGTT CGACGAGCTTATTCGTCGTCCCCACGGCATTATTCTGGTCACAGGCCCTACGGGTTCAGGTAAGAGTACTACGCTGTACG CCGGGCTTACCGAGATTAACTCTAAAGATACCAACATCTTAACCGTTGAAGATCCGATCGAATACGAGTTAGAAGGTATA GGTCAAACCCAAGTGAACACTAAGGCTGACATGACCTTCGCCCGTGGTCTGCGTGCGATTCTGCGTCAGGACCCGGATGT GGTGATGATCGGCGAAATCCGTGACCTTGAAACCGCCCAAATTGCGGTGCAGGCATCCTTGACTGGTCACTTAGTGATTT CAACCCTGCATACCAACACGGCTTCTGGTGCAATTACCCGTTTGCAAGACATGGGCGTAGAGCCATTCCTAGTGTCATCG AGTTTGCTTGGGGTATTAGCACAGCGTTTGATACGTACCCTCTGTCCAAAATGTAAGACAGAGCATGTGCCGGATGTCCG TGAGCGTGAGCTGCTGGGGATTGCGGCGGATGATCATCGCCATATTTATCGCGCCAATGGCTGTAAGGCCTGTGGTAACA GTGGTTACCGTGGTCGTACTGGCATCCATGAGTTATTGCTGGTCGATGATAATGTGCGCGAGCTGATCCACGGAGGTCGT GGTGAGCTGGCAATTGAGAAATATATTCGCCAGTCGGTGCCGAGCATTCGCCATGATGGTATGAGCAAGGTGCTCTCAGG TATCACTACTCTGGAAGAAGTCCTGAGGGTGACCCGCGAGGAGTAA Protein sequence : MSEIQVTQVEDLSLVSNELGLEAEGDEVFRSSSKERLPFAFAHRHEVILAFGEDGALSLFYTAKTPLAAMLEARRYSGVD LPLVLLEPGKFEAKLTQAYQANSSEAQQLMEDIGNEMDLFTLAEELPQTEDLLEGDDDAPIIKLINALLSEAIKEEASDI HIETYEKQLVVRFRIDGVLKEVLKPNRKLSSLLVSRIKVMARLDIAEKRVPQDGRISLRIAGRAVDVRVSTMPSSHGERV VLRLLDKNAGNLDLKQLGMTDSIRAKFDELIRRPHGIILVTGPTGSGKSTTLYAGLTEINSKDTNILTVEDPIEYELEGI GQTQVNTKADMTFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHLVISTLHTNTASGAITRLQDMGVEPFLVSS SLLGVLAQRLIRTLCPKCKTEHVPDVRERELLGIAADDHRHIYRANGCKACGNSGYRGRTGIHELLLVDDNVRELIHGGR GELAIEKYIRQSVPSIRHDGMSKVLSGITTLEEVLRVTREE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-151 | 64 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-151 | 64 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shewmr7_0152 | YP_736215.1 | type II secretion system protein E (GspE) | VFG0182 | Protein | 9e-151 | 65 |
| Shewmr7_0152 | YP_736215.1 | type II secretion system protein E (GspE) | VFG2048 | Protein | 6e-152 | 63 |
| Shewmr7_0152 | YP_736215.1 | type II secretion system protein E (GspE) | VFG1876 | Protein | 4e-137 | 57 |
| Shewmr7_0152 | YP_736215.1 | type II secretion system protein E (GspE) | VFG2426 | Protein | 1e-78 | 46 |
| Shewmr7_0152 | YP_736215.1 | type II secretion system protein E (GspE) | VFG1880 | Protein | 8e-87 | 43 |
| Shewmr7_0152 | YP_736215.1 | type II secretion system protein E (GspE) | VFG0112 | Protein | 5e-85 | 42 |
