Gene Information

Name : Shewmr4_0713 (Shewmr4_0713)
Accession : YP_732850.1
Strain : Shewanella sp. MR-4
Genome accession: NC_008321
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 826956 - 827627 bp
Length : 672 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0857 ABC transporter, ATP-binding protein

DNA sequence : 
ATGTCAGAAGTAGCCAAACTTATCCAAGTGAGTAAAAGTTTTCGCGACGGCGAGCAGCGCCATACCGTACTGCAAGCCGT
CGATTTAACCTTGCATCGCGGTGAAACCATCGCACTCACGGGCCCCAGCGGCAGCGGTAAAAGCACACTGCTAAATTTGA
TCGCTGGCTTTGAAACGCCAGACAGCGGCCAGATAGTGTTGAATCATCAATCCACCCAAGATTGGCAAGACAAACACTGG
AGCGAGTTCAGGCGCAATCATTTGGGCGTGGTGTTTCAACAATTTAATCTGCTGACGCCGCTCAATGTGAGAAACAACAT
AGGTTTTTCACTCAACCTCAATGGCACCAGTTGGAATCCTTGGTGCGATTATCTCGTCGACAAATTGGGGCTGGCTTCAC
TGCTCAATCGGCAGGTCGAGGCACTTTCAGGCGGGCAACAGCAAAGGGTTGCTATCGCCAGAGCCTTAGCCCACAACCCG
AGTTTACTGCTGGCCGACGAACCCACGGGCAACCTCGATGATGAATCGGGAAAACAGGTAATGTCGCTGCTGTGCGAACT
GGCCAAAGAAAGCCAAACCAGCATACTCATGGTCACCCACAGTGAGGAATGCGCCGCCTTTATGCACAAACGCTGGCATC
TTTCCCACGCCGCTGTGTCTATCTCCGGTTAA

Protein sequence : 
MSEVAKLIQVSKSFRDGEQRHTVLQAVDLTLHRGETIALTGPSGSGKSTLLNLIAGFETPDSGQIVLNHQSTQDWQDKHW
SEFRRNHLGVVFQQFNLLTPLNVRNNIGFSLNLNGTSWNPWCDYLVDKLGLASLLNRQVEALSGGQQQRVAIARALAHNP
SLLLADEPTGNLDDESGKQVMSLLCELAKESQTSILMVTHSEECAAFMHKRWHLSHAAVSISG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-26 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-26 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-26 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-26 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shewmr4_0713 YP_732850.1 ABC transporter-like protein CP001581.1.gene798.p Protein 1e-32 44
Shewmr4_0713 YP_732850.1 ABC transporter-like protein NC_012469.1.7686878. Protein 2e-39 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shewmr4_0713 YP_732850.1 ABC transporter-like protein VFG2059 Protein 7e-22 42