Gene Information

Name : Shewmr4_0637 (Shewmr4_0637)
Accession : YP_732774.1
Strain : Shewanella sp. MR-4
Genome accession: NC_008321
Putative virulence/resistance : Virulence
Product : two component LuxR family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG4566
EC number : -
Position : 739808 - 740419 bp
Length : 612 bp
Strand : +
Note : PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: vfi:VFA0103 two component response regulator

DNA sequence : 
ATGAGCCACGAATTGCCCGTGTATTTAATCGATGACGATGAGTCGGTGCGCCGCTCGCTGCGGTTTATGCTCGAAAGCTA
TGGCTTGAATATCCACGATTTTGATAGCGCCGAGGCGTTTTTTGCCGCCATCGACTTGAGCGAGCCGGGCTGTGCCTTAG
TCGATGTGCGTATGCCGGGCCTTAGCGGGCCGCAGTTACATGCGCAATTAGTGCAGCATAATAGTCCGCTGGCGGTGATT
TATCTTACCGGCCACGGCGATGTGCCCATGGCGGTGGAGGCGCTAAAACTCGGGGCGGTGGATTTTTTCCAAAAGCCCGC
CGATGGCGCTAAGCTCGCGGACGCGGTAGTGAAAGCGCTAGAGCATGCCAAGGCATATCACCAAAATAATCAATATCTTC
AGACTTATCAGGCGCTCACACCGCGTGAGCGGGAAATCCTCATTCTTATCGCCAAAGGCTATAAGAATCAGGAGATCGCC
GATACGCTGTGCATCGCCATGCGCACGGTCGAGATTCACCGCGCGAACTTAATGAAAGGCATGCAGGTCGGCTCGCTCGC
CGAGATGATGTTAATTTATGGCCGCATCGCCGATCGCCTTCCCTCCGCATAA

Protein sequence : 
MSHELPVYLIDDDESVRRSLRFMLESYGLNIHDFDSAEAFFAAIDLSEPGCALVDVRMPGLSGPQLHAQLVQHNSPLAVI
YLTGHGDVPMAVEALKLGAVDFFQKPADGAKLADAVVKALEHAKAYHQNNQYLQTYQALTPREREILILIAKGYKNQEIA
DTLCIAMRTVEIHRANLMKGMQVGSLAEMMLIYGRIADRLPSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ttrR CAB37412.1 TtrR Virulence SPI-2 Protein 2e-36 46
ttrR YP_216395.1 tetrathionate reductase complex: response regulator Virulence SPI-2 Protein 3e-36 46
ttrR NP_456141.1 putative two-component response regulator Not tested SPI-2 Protein 3e-36 46
ttrR NP_805058.1 two-component response regulator Virulence SPI-2 Protein 3e-36 46
ttrR NP_460352.2 response regulator Virulence SPI-2 Protein 2e-36 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shewmr4_0637 YP_732774.1 two component LuxR family transcriptional regulator VFG0488 Protein 7e-37 46