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Name : Shewmr4_0420 (Shewmr4_0420) Accession : YP_732557.1 Strain : Shewanella sp. MR-4 Genome accession: NC_008321 Putative virulence/resistance : Virulence Product : type IV-A pilus assembly ATPase PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 465080 - 466789 bp Length : 1710 bp Strand : - Note : TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: son:SO0416 type IV pilus biogenesis protein PilB DNA sequence : ATGCCATCTACAGGCCTTCATTTAGGTTTATCTACCTTATTTATTCGTAAAGGCCTGCTAAATGAAGAGCAGATGGCGGG CGCTATCGCTAAATCCAGACAGACAAAACAGGCACTCGTTAGCACCCTAGTACAAACTAAGCTGATTTCGGCACGCTCGG TTGCCGAACTTTGCTATGAAGAATATGGCACCCCGCTGCTAGATTTAGCCGAGTTTGAACTCAGTGCCATTCCCGAAGAA TTTACCAATAAAAAGCTGATTGAAAAGCACCGCTGTTTACCCTTATTTAAACGCGGTAATCGCCTCTACATTGCGACATC AGACCCTACAAATATTGCTGCACTTGAAGAGTTTCAATTCAGTGCGGGCCTACATGCCGAAGCCATTCTAGTTGAAGAAG ATAAGCTCGCTAAAGCCCTCGAAAAGGTACTCGAAGAGGATATTACCAGCCTTGATTTAGGAGGTATGGATGAAGCGGCT TTAGCCGGCATAGAAGTTACCGATACCGATAAACGCCAAGACGAGAATACAAGTGACGGTAGTGATGATGCACCAATCGT CATTTATATCAATAAGATATTAACCGATGCAATTCGTAAGGGGGCATCAGATCTTCACTTTGAACCCTATGAAAAACGCT ACCGCATTCGTTTCCGTATCGATGGTATTTTGCATGAAGTCTCCGAACCGCCAATTAGCCTAGCAGGGCGGTTATCGGCG CGCTTAAAGGTAATGTCGAAACTCGATATTGCCGAACGCCGCGTTCCTCAGGATGGCAGGATTAAGATGAAGCTTTCCCG CACTAAGTCCATCGACTTTCGGGTGAGCACATTACCGACGCTCTGGGGCGAAAAAATTGTAATGCGGATATTAGATTCCT CCTCCGCACAGCTCGGCATTGAAAAACTAGGTTATGAACCCGATCAAGAAAAGCTTTACCTTGAGATGCTCGCCAAACCC CAAGGGATGATCTTAGTCACAGGTCCTACAGGTTCGGGTAAAACGGTTTCGCTTTATACAGGGTTAAATATCCTCAATAC TGCCGAGCGCAATATCTCTACCGCCGAAGACCCGGTAGAAATCAACCTTGAAGGGGTTAACCAAGTCCATATTAATTTAA AGGCGGGTTTAACCTTTGCTTCAGCGCTACGTTCCTTTTTGCGTCAAGACCCCGATGTCGTTATGGTGGGAGAAATCCGC GACCTTGAGACCGCCGAAATTGCCATTAAAGCCGCGCAAACGGGTCACTTAGTATTATCAACACTGCACACAAACTCGGC GGCGGAAACTTTGACCCGTTTAATTAATATGGGTGTACCTGGTTACAATATCGCCAGTTCAGTGAATCTGATTATTGCTC AGCGTCTTTCTAGACGACTCTGCCCGGAATGCAAGCAAGCAGAGCATATTCCAGAACATGAATTGCAACGTTTAGGCTTT ACCGATGAGCAAATCGCTCAAGGCTTTACCACCTATAAACCTGTAGGTTGTGAGCATTGTTCTGGCGGATATAAAGGACG GGTGGGTATTTACGAAGTAATGAAAATGTCCGATGAAATCGCTCGTACAATTATGGAAGGCGGCAATTCATTACAAATTG CCGAGCAAGCCAAAGCACAGGGGATGCGTGATCTGCGTCAATCGGGCCTTCTTAAAGTTATCCAAGGGGTAACCAGTATT GCCGAAGTAAACCGAGTCACAAGTTTTTAA Protein sequence : MPSTGLHLGLSTLFIRKGLLNEEQMAGAIAKSRQTKQALVSTLVQTKLISARSVAELCYEEYGTPLLDLAEFELSAIPEE FTNKKLIEKHRCLPLFKRGNRLYIATSDPTNIAALEEFQFSAGLHAEAILVEEDKLAKALEKVLEEDITSLDLGGMDEAA LAGIEVTDTDKRQDENTSDGSDDAPIVIYINKILTDAIRKGASDLHFEPYEKRYRIRFRIDGILHEVSEPPISLAGRLSA RLKVMSKLDIAERRVPQDGRIKMKLSRTKSIDFRVSTLPTLWGEKIVMRILDSSSAQLGIEKLGYEPDQEKLYLEMLAKP QGMILVTGPTGSGKTVSLYTGLNILNTAERNISTAEDPVEINLEGVNQVHINLKAGLTFASALRSFLRQDPDVVMVGEIR DLETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLINMGVPGYNIASSVNLIIAQRLSRRLCPECKQAEHIPEHELQRLGF TDEQIAQGFTTYKPVGCEHCSGGYKGRVGIYEVMKMSDEIARTIMEGGNSLQIAEQAKAQGMRDLRQSGLLKVIQGVTSI AEVNRVTSF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-87 | 44 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-87 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shewmr4_0420 | YP_732557.1 | type IV-A pilus assembly ATPase PilB | VFG0112 | Protein | 4e-176 | 62 |
| Shewmr4_0420 | YP_732557.1 | type IV-A pilus assembly ATPase PilB | VFG1880 | Protein | 3e-153 | 56 |
| Shewmr4_0420 | YP_732557.1 | type IV-A pilus assembly ATPase PilB | VFG0233 | Protein | 1e-129 | 50 |
| Shewmr4_0420 | YP_732557.1 | type IV-A pilus assembly ATPase PilB | VFG0182 | Protein | 1e-86 | 49 |
| Shewmr4_0420 | YP_732557.1 | type IV-A pilus assembly ATPase PilB | VFG1876 | Protein | 5e-85 | 47 |
| Shewmr4_0420 | YP_732557.1 | type IV-A pilus assembly ATPase PilB | VFG2048 | Protein | 3e-88 | 45 |
