Gene Information

Name : Shewmr4_3517 (Shewmr4_3517)
Accession : YP_735640.1
Strain : Shewanella sp. MR-4
Genome accession: NC_008321
Putative virulence/resistance : Virulence
Product : two component LuxR family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG4566
EC number : -
Position : 4206027 - 4206632 bp
Length : 606 bp
Strand : +
Note : PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: son:SO4157 DNA-binding response regulator

DNA sequence : 
ATGTCCACCAAGCTACAGTTGTACTTAGTCGATGATGATGAGGCGATTCTCGATTCTCTAGGGTTTATGCTCGGGCAATT
TGGCTATCAAGTACAAACCTTTAGCAGTGGACGGGATTTTTTAGCCCAATGCCCCTTAACGCAGGCGGGCTGCGTGATTT
TAGATAGCAGAATGCCGGAGATCACCGGCCAAGAAGTCCAGCAAAAATTGCTTGAGACCCAAAGCCCGCTGGGTGTGATC
TTTCTAACGGGTCACGGCGATTTACCTATGGCATTAAGCGCCTTCCGCAAAGGTGCCTGTGACTTTTTTCAAAAGCCCGT
GTCCGGCAAAGCTTTGGTTCAAGCGATTGAAAAAGCGCATAAAGAAAGCCAAGCCAGTTTTGAGCAACTGTATCTGCAGC
AAAAATTTGCCCAACTGACTGAGCGCGAACAACAAGTTTTAGCCCATGTGGTTCAAGGCATGACCAATAAACAGATCTCC
GAAGCCATGTATTTATCCTTAAGAACCATCGAAGTCCATCGCGCTAAGATTATGAAAAAGCTCGAAGTTAGCAATATGGC
CGAATTAGTCCAGCATTTAGCTCACCTCAATGCCCTACTGCCTTAA

Protein sequence : 
MSTKLQLYLVDDDEAILDSLGFMLGQFGYQVQTFSSGRDFLAQCPLTQAGCVILDSRMPEITGQEVQQKLLETQSPLGVI
FLTGHGDLPMALSAFRKGACDFFQKPVSGKALVQAIEKAHKESQASFEQLYLQQKFAQLTEREQQVLAHVVQGMTNKQIS
EAMYLSLRTIEVHRAKIMKKLEVSNMAELVQHLAHLNALLP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ttrR CAB37412.1 TtrR Virulence SPI-2 Protein 2e-35 43
ttrR YP_216395.1 tetrathionate reductase complex: response regulator Virulence SPI-2 Protein 3e-35 43
ttrR NP_456141.1 putative two-component response regulator Not tested SPI-2 Protein 3e-35 43
ttrR NP_805058.1 two-component response regulator Virulence SPI-2 Protein 3e-35 43
ttrR NP_460352.2 response regulator Virulence SPI-2 Protein 3e-35 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shewmr4_3517 YP_735640.1 two component LuxR family transcriptional regulator VFG0488 Protein 8e-36 43