Gene Information

Name : Shewmr4_3278 (Shewmr4_3278)
Accession : YP_735402.1
Strain : Shewanella sp. MR-4
Genome accession: NC_008321
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3911692 - 3912453 bp
Length : 762 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sde:Sde_3703 response regulator receiver domain protein (CheY-like)

DNA sequence : 
ATGATGCCAAACCAGCCAACCCACAATTCCACGTTTTCCCCTTTCAAAATGGAAGGTGCGGTGCAGATCCTATTGGTCGA
AGACGAGCAGGATCTGGCTCAGATGATTATGGTGAATCTCACAGCCCTCAATTTTCGGGTCTTTCACGCCGCCTCTCTGC
ATCAGGCCAACGCTTTGCTGCAGGCCAAACGCATCGATTTGGTGCTGCTCGACCGTATGCTGCCTGATGGCGACGGTTTG
TTGTTGTGCCAGCAACTAAGGAACGACGGACAACAAATGCCAGTGATGTTGCTCACCGCCCGCGACGGCGAGGCTGATAC
AGTGCTAGGGCTTGAAAGCGGCGCCGACGACTATATGACCAAACCCTTCAGCGTGCTTGAACTCAGGGCCAGAACCAAAG
CACTGCTTCGCCGTCACCTCTCCGCCACCCCAACAAGGCAGTTGATTGAATTTGAGGGGCTTCGCATCGATTTGGATTCC
CGTGAAGTCATCGCCTTTGATAATCCCTTACCGCTAACCGCCAAAGAGTTTGATTTACTGACCTTTCTTGCCCGTCATCC
CCAACAGGTTTTCAGCCGTACCCAACTGCTCGATGCGGTGTGGGGGTATCGCTTCGATGGTTTTGAACATACAGTAAACA
GTCATATCAATCGCTTACGCGGCAAACTTGCCCATATTCCTGGCTCCCGCGAGCTGGTGCAGACCGTATGGGGGGTGGGC
TATAAATTTGCCTTACCCAGCATGCAGGCAGCGTTGCACTGA

Protein sequence : 
MMPNQPTHNSTFSPFKMEGAVQILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGL
LLCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHLSATPTRQLIEFEGLRIDLDS
REVIAFDNPLPLTAKEFDLLTFLARHPQQVFSRTQLLDAVWGYRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVG
YKFALPSMQAALH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 7e-46 46
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 6e-45 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shewmr4_3278 YP_735402.1 two component transcriptional regulator AE000516.2.gene3505. Protein 1e-34 43
Shewmr4_3278 YP_735402.1 two component transcriptional regulator HE999704.1.gene2815. Protein 7e-35 42
Shewmr4_3278 YP_735402.1 two component transcriptional regulator AF162694.1.orf4.gene Protein 8e-33 41
Shewmr4_3278 YP_735402.1 two component transcriptional regulator CP004022.1.gene3215. Protein 4e-28 41
Shewmr4_3278 YP_735402.1 two component transcriptional regulator NC_012469.1.7685629. Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shewmr4_3278 YP_735402.1 two component transcriptional regulator VFG1563 Protein 4e-46 46
Shewmr4_3278 YP_735402.1 two component transcriptional regulator VFG1702 Protein 2e-45 45
Shewmr4_3278 YP_735402.1 two component transcriptional regulator VFG1389 Protein 2e-28 41