|
Name : Shewmr4_0304 (Shewmr4_0304) Accession : YP_732441.1 Strain : Shewanella sp. MR-4 Genome accession: NC_008321 Putative virulence/resistance : Virulence Product : TonB-dependent siderophore receptor Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG1629 EC number : - Position : 325211 - 327448 bp Length : 2238 bp Strand : - Note : TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eca:ECA0876 TonB-dependent ferric aerobactin receptor DNA sequence : ATGCCTAAGTCTATGGGGCCGATAAGCCTAGTCGCCGCCGCAGTTATCTGCCAACTGGGGCTTGTTAATGTGGCAACAGC CGCTGAAAACGATATGGAGCGCATGGTGGTCTCCGCCACCCGCTCACCGACCCAAATCAGCGATCTCTCCAGCACTGTGT GGATCATTGATGAAGCCAGCATTCGCGAGCAAACCGATAGCGGCAAAGGTATTAAGGAAATGCTCGCCGCCTTAGTGCCG TCGATGGATGTGTCCAGCCAAGGGCGCACCAACTTTGGCCAAAATATTCGCGGTCGCGCCATGGTGGTCTTAATCGATGG CGTGTCGATGAACACCTCCCGCAGTATCAGCCGCCAGCTCGACAGTATCGATCCATTCAATATTGCCCGCATCGAAGTGC TCGCTGGCGCGTCGGCTATCTATGGCGGTGGCGCACTGGGCGGTGCCATTAATATTGTCACTAAAAAAGCGGCTGACAGC AGTGATACCTTCGAAGCCGAAGCGGGATTCAAGTCCGGCTTTAATAGCAGTGATGATTTAGATTACCGCACCGCGCTGGC GGTGACCGGGGGCAGCGATTCGCTTAAAGGGCGCTTTAGTGCCGCTTGGCAGGAAAACGGCCAATGGTTTGATGGCAGTA GCAACCCTGTGATGCTGGACATTACCCAAACCGGAATGCAGTACACCCAAGGTTATGATTTAATGGCGAATATGGATTGG CAGCTTGCCAATGACGCCAACCTCAGCGCCATGGCGCAATACTATCGCAACGGTTCAGACGATGAACATGGTCTGTATAT GGGTGAGAACTTCTCAGGCGTCACTGGCGATGCCTCAGTGCTAGAAACCCGTAAGGGATTAGACGCTGACCGCAGCCCCG CCACCGAGCGCACTTTGCTGAATCTGTCCTACTCCCAGAATGAGTTTCTTGGTCAAACCCTGTATTTACAAGGCTTTTAT CGCAAAGAGAATCTGGATTTCCACCCGTTCCCCTATGTCAATGAAACCAGCGGCGTCTACAACTTCTCAGCATCGGCCCA AAACACCAGTATCTATGGTTTGAAGGCGGTCGTGGAATCCAAGCCCGTCGATAGCCTCACTCTTACCTGGGGACTGGATT GGGATAAAGAAAGTTTTGATTCGAGCCAAATGAGCTTCGACCTCGATGCCGCCAACCAACACGGCGGCTTAGTGATGCGC GAGCTGTTCACTACCGGCCGTTATGTCGACTTTTCGGTCGAATCCATTGCTGCATTTGTCCAAAGCAGTTGGGAGATGAA TAGCTTTTTGGTGCTAAACGCAGGCTATCGTTATCAACACATGGAAAACAGCGTTGATGATTTTATCGGTTATAACCAAC AGGTGACGATCGCCTCTGGCAAAGCCAAGGGAGCCGATGCCATTAAAGGCGGCAGCACCGACTATAACATAGGTTTAGTC AACCTCGGCTTGGTGGCTAAGTTAAGCCAAGACCAACAACTCTGGCTTGCCTATTCCCAAGGCTTTGAGCTGCCAGACCT GTCGAAATACTACGGCCGCGGCACCTACAAGGCCGATGCCGACGGTTACTTACAGCTGCAAAACAGCATCAATATCAATG ATACCCGCCTTGACGGGATCAAGACCGACTCCATGGAACTGGGATGGCGTTACCTTGCAGACCGTTGGCAGGCGCAAGCC AGCATCTACTATGCCGTGTCTGACAAGGTGATTGAGGTGAACAGCAAAGATCTGACCATCGATGTCAAAGACCAAGATAA GCGCAGCTATGGCCTAGAGGCACAACTGAACTTTGATATCAGCTCCGACTGGCAAGTCGGCACCAACCTGCATCTGGTGC GCAGTGAAGTGAAAGATGAGAATAATTGGATTGATGAAACCGTCACTTATGCTTCGCCCTCTAAGGCGACCGCCTTTATT GGCTGGCGAGGCGAGACACAGAAGATCCGTTTACAAGCTGAGCACAGTTTTAGCGCCGAATCTGACTATCGCTTCAAAAC CAACGATGGCCTAGCGAGTGAGCTTGATAGCTACACGACGCTGGATTTACTGGGCTCTATCGATTTACCGGTCGGCACCT TGAGCTACGGCATCGAAAACCTGCTCGATAAAGACTACAGCACCCTGTGGGGCCAAAGAGCGGTGTACTTCTACAGCCCG ACCTACGGTCCTGAGTCAATGTTCGACTACCATGGCCGCGGTCGCACCTTTGCCCTCAATTATCAACTGAGTTGGTGA Protein sequence : MPKSMGPISLVAAAVICQLGLVNVATAAENDMERMVVSATRSPTQISDLSSTVWIIDEASIREQTDSGKGIKEMLAALVP SMDVSSQGRTNFGQNIRGRAMVVLIDGVSMNTSRSISRQLDSIDPFNIARIEVLAGASAIYGGGALGGAINIVTKKAADS SDTFEAEAGFKSGFNSSDDLDYRTALAVTGGSDSLKGRFSAAWQENGQWFDGSSNPVMLDITQTGMQYTQGYDLMANMDW QLANDANLSAMAQYYRNGSDDEHGLYMGENFSGVTGDASVLETRKGLDADRSPATERTLLNLSYSQNEFLGQTLYLQGFY RKENLDFHPFPYVNETSGVYNFSASAQNTSIYGLKAVVESKPVDSLTLTWGLDWDKESFDSSQMSFDLDAANQHGGLVMR ELFTTGRYVDFSVESIAAFVQSSWEMNSFLVLNAGYRYQHMENSVDDFIGYNQQVTIASGKAKGADAIKGGSTDYNIGLV NLGLVAKLSQDQQLWLAYSQGFELPDLSKYYGRGTYKADADGYLQLQNSININDTRLDGIKTDSMELGWRYLADRWQAQA SIYYAVSDKVIEVNSKDLTIDVKDQDKRSYGLEAQLNFDISSDWQVGTNLHLVRSEVKDENNWIDETVTYASPSKATAFI GWRGETQKIRLQAEHSFSAESDYRFKTNDGLASELDSYTTLDLLGSIDLPVGTLSYGIENLLDKDYSTLWGQRAVYFYSP TYGPESMFDYHGRGRTFALNYQLSW |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| iutA | NP_839219.1 | ferric siderophore receptor | Virulence | SHI-2 | Protein | 3e-153 | 47 |
| iutA | NP_709458.2 | ferric siderophore receptor | Virulence | SHI-2 | Protein | 3e-153 | 47 |
| iutA | AAD44750.1 | IutA | Virulence | SHI-2 | Protein | 6e-152 | 47 |
| iutA | AAK71635.1 | IutA | Virulence | SHI-3 | Protein | 2e-152 | 47 |
| iutA | YP_002414042.1 | Ferric aerobactin receptor | Virulence | Not named | Protein | 2e-152 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shewmr4_0304 | YP_732441.1 | TonB-dependent siderophore receptor | VFG0619 | Protein | 1e-153 | 47 |
| Shewmr4_0304 | YP_732441.1 | TonB-dependent siderophore receptor | VFG1085 | Protein | 9e-153 | 47 |
| Shewmr4_0304 | YP_732441.1 | TonB-dependent siderophore receptor | VFG0936 | Protein | 8e-153 | 47 |
