Gene Information

Name : Shewmr4_0281 (Shewmr4_0281)
Accession : YP_732418.1
Strain : Shewanella sp. MR-4
Genome accession: NC_008321
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 301028 - 301705 bp
Length : 678 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4428 DNA-binding response regulator

DNA sequence : 
ATGAAAATACTTTTAGTTGAAGATGATGCGACAACGATCGATTACATCGTTAAAGGATTTCTTGAGCAGGGGCATAATAT
TGAGACCGCCAGCGATGGTCATCAAGGCCTGCTGCAAGCCACGAGTGGTCAGTACGACCTCTTGATTCTCGACCGCATGT
TGCCCCAACTCGATGGTTTGAAACTGCTAGCCGCCCTCAGAGCCACGGGCAATCAAACCCCAGTGCTTATCCTGTCGGCG
CTGGCCCATGTGGATGAAAGGGTGAAAGGCCTGCGTGCGGGCGGCGATGATTATATGACTAAGCCCTTTGCCTTTTCGGA
GCTGCTCGTACGTGCCGAAAAGTTGATGCAACGGGGTCAATCCGTCCCTATTACCACAGATTTAGTGGTCGGCGGCTTAA
AAATGGAGCTGCTCACCCGCAATGTGACCTTAGATGGTCACGATTTAATGCTGCAACCCAAAGAATTCCAACTGCTTAAG
TATCTGATGGAACACGCCAATCAGGTTATTAGCCGCACGCTACTATTCGAAGCTGTGTGGGATTATCACTTCGATCCCCG
TACTAATGTGATCGACGTGCATATCGCCAAGTTACGCCGCAAGTTTGAAGAGTTAGGCCACGGTGAATTGATTGAAACCG
TAAGGGGAGCGGGTTATCGCTTACGCCAAAGGCATTAA

Protein sequence : 
MKILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLLQATSGQYDLLILDRMLPQLDGLKLLAALRATGNQTPVLILSA
LAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQSVPITTDLVVGGLKMELLTRNVTLDGHDLMLQPKEFQLLK
YLMEHANQVISRTLLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRLRQRH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-42 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-42 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shewmr4_0281 YP_732418.1 two component transcriptional regulator BAC0083 Protein 4e-43 45
Shewmr4_0281 YP_732418.1 two component transcriptional regulator BAC0111 Protein 1e-46 44
Shewmr4_0281 YP_732418.1 two component transcriptional regulator BAC0347 Protein 1e-43 43
Shewmr4_0281 YP_732418.1 two component transcriptional regulator BAC0197 Protein 8e-40 43
Shewmr4_0281 YP_732418.1 two component transcriptional regulator BAC0638 Protein 2e-39 43
Shewmr4_0281 YP_732418.1 two component transcriptional regulator BAC0308 Protein 1e-42 42
Shewmr4_0281 YP_732418.1 two component transcriptional regulator BAC0125 Protein 2e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shewmr4_0281 YP_732418.1 two component transcriptional regulator VFG0596 Protein 1e-42 45
Shewmr4_0281 YP_732418.1 two component transcriptional regulator VFG1389 Protein 5e-36 44