Gene Information

Name : Shewmr4_2784 (Shewmr4_2784)
Accession : YP_734912.1
Strain : Shewanella sp. MR-4
Genome accession: NC_008321
Putative virulence/resistance : Virulence
Product : phage transcriptional regulator, AlpA
Function : -
COG functional category : K : Transcription
COG ID : COG3311
EC number : -
Position : 3332206 - 3332406 bp
Length : 201 bp
Strand : -
Note : PFAM: Prophage CP4-57 regulatory; KEGG: vvy:VV0262 prophage regulatory protein

DNA sequence : 
ATGTCCAATAAAATCATGCGATTACCTGAGGTTAAGAGCCGAACAGGTCTATCTCGTAGCAGTATCTATTTACGTATTTC
TAAAGGGGAATTCCCTGCAAGCATCTCATTAGGTGACCGTGCAGTTGGTTGGCTTGAAGCAGATATTGAGCAGTGGCTTG
ATGAGCGCATTGCTGCATCTAAGGCGGCTAACAATGGGTAG

Protein sequence : 
MSNKIMRLPEVKSRTGLSRSSIYLRISKGEFPASISLGDRAVGWLEADIEQWLDERIAASKAANNG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 9e-12 48
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 1e-11 48
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 1e-11 48
ORF C109 AAN62202.1 phage-related protein Not tested PAGI-2(C) Protein 2e-09 44
unnamed CAB46594.1 DNA-binding protein Not tested HPI Protein 3e-10 42
unnamed CAA21398.1 - Not tested HPI Protein 4e-10 42
ORF SG104 AAN62325.1 phage-related protein Not tested PAGI-3(SG) Protein 2e-08 42
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 3e-10 42
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 3e-10 42
PMI2608 YP_002152324.1 prophage regulatory protein Not tested Not named Protein 1e-08 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shewmr4_2784 YP_734912.1 phage transcriptional regulator, AlpA VFG1118 Protein 4e-12 48
Shewmr4_2784 YP_734912.1 phage transcriptional regulator, AlpA VFG1141 Protein 9e-11 42