Gene Information

Name : Shewmr4_2240 (Shewmr4_2240)
Accession : YP_734368.1
Strain : Shewanella sp. MR-4
Genome accession: NC_008321
Putative virulence/resistance : Unknown
Product : IS4 family transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2678296 - 2679498 bp
Length : 1203 bp
Strand : +
Note : PFAM: transposase, IS4 family protein; KEGG: sdn:Sden_3325 transposase, IS4

DNA sequence :
ATGCGTGATATCGACATATTACACGATTTACTCAAAAAACAATGCCCTCAAATACATCAAAAACGCCTTAATTCTCTGAT
GGTTGCTACCGAGTCTTTACTCGATGGTAATCAACTCTCGTTAACCCAGTTAGGACGGAACATAACGGGGAATGTTGCAC
CAAAACACAATATCAAGCGCATTGACCGACTGCTCGGAAATTTACATGTTATCAAAGATAAGTTCGCTATTTATCAATGG
CATGCACAATATCTCTGCGGCGCAAATCCGATGCCCATTATTCTTGTGGATTGGTCTGATGTACGCGAGCAACTGCGAAT
GATTACCTTACGCGCATCAATCAGTGTTAAAGGTCGCTCCATTACTTTGTACGAACGCACTTTTCTGTTTGAAGATTACA
ATGCTCCACGCAGTCATAACGCTTTCCTAGTTGAGCTTGCAAACGTATTGCCGCCAGGATGCTGCCCGCTCATCGTCACC
GATGCAGGTTATCGCAATACTTGGTTTAGGGAAGTTGAGCGCCATGGCTGGTTTTGGCTAGGTAGAGTTCGCGGTGACGT
CAGTTTTATGCTCAACGGCCAAACATCATGGCAGTCAAATAAATCCCTCTATCCTAAAGCGAATTCAACCGCGAAATACA
TAGGTAGTGTCAAGTTAGCACGCAAGTCTCCGCTACAATGTTACCTGCACTTGTTTAAAGCTAAACCTAAGCTGCGTAAG
GATAAACGCTCTTCTAAGGCTGGACGAAATCACACCGCACAAAAGAGTTACAGCTTAGGAAGTAAAGAGCCTTGGCTACT
CGCCACCAATCTACCTCCAGATTACTTTGGCCCTTCGAAGGTCGTCGATTTGTATGCTAAACGAATGCAAATTGAAGAAA
CCTTCCGCGATTTAAAAAGTCCGCAATATGGCATGGGCCTCAGACAAAGCCGCAGCCGTTGTCCAAAGCGATATGATGTA
TTGCTGCTCATCGCTATGCTCGCTGAAATCGTGTTGTGGTGTATTGGGTTAGCGGCACAACACCTTGGATGGCAAAGATA
TTTTCAAGCCAATACCGTGAGAAAGCGGGCAGTGCTATCAATTGTTAGACTTGGAAAGGAAGTACGTAAAAGAGACAAAT
ATCCGGTAAAGGAGACAATTTTTCGCTGGGCATTAGTCGAATATATAAACTTAGTTCATGACGCTGGAAGACCTCAATTA
TGA

Protein sequence :
MRDIDILHDLLKKQCPQIHQKRLNSLMVATESLLDGNQLSLTQLGRNITGNVAPKHNIKRIDRLLGNLHVIKDKFAIYQW
HAQYLCGANPMPIILVDWSDVREQLRMITLRASISVKGRSITLYERTFLFEDYNAPRSHNAFLVELANVLPPGCCPLIVT
DAGYRNTWFREVERHGWFWLGRVRGDVSFMLNGQTSWQSNKSLYPKANSTAKYIGSVKLARKSPLQCYLHLFKAKPKLRK
DKRSSKAGRNHTAQKSYSLGSKEPWLLATNLPPDYFGPSKVVDLYAKRMQIEETFRDLKSPQYGMGLRQSRSRCPKRYDV
LLLIAMLAEIVLWCIGLAAQHLGWQRYFQANTVRKRAVLSIVRLGKEVRKRDKYPVKETIFRWALVEYINLVHDAGRPQL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
IS1999 CAJ77042.1 Insertion sequence Not tested AbaR1 Protein 4e-105 52
IS10 CAI43894.1 transposase for IS10 Not tested LEE Protein 2e-99 50
SF2983 NP_708757.1 iso-IS10R ORF Not tested SHI-1 Protein 2e-99 50
tnp AEA34664.1 IS10 transposase Not tested Not named Protein 5e-99 49
tnp AEA34674.1 IS10 transposase Not tested Not named Protein 5e-99 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Shewmr4_2240 YP_734368.1 IS4 family transposase VFG0647 Protein 8e-100 50