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Name : araD (Shewmr4_1978) Accession : YP_734108.1 Strain : Shewanella sp. MR-4 Genome accession: NC_008321 Putative virulence/resistance : Unknown Product : L-ribulose-5-phosphate 4-epimerase Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0235 EC number : 5.1.3.4 Position : 2352913 - 2353608 bp Length : 696 bp Strand : + Note : catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source DNA sequence : ATGTCTTTTTTAGAGCTAAAACGCGAAGTATACGAAGCCAACATGGAGCTTGAGAAACGCAAACTGGTGACTTACACCTT CGGCAACGTTTCACAAATTGACCGCCAACTCGGCGTGATTGGTATCAAGCCCAGCGGCGTGCCCTATGAAGATTTGAAGG TTGAAGACATTGTAATTGTTGACCTTGAGAATCAAATCGTAGAAGGGCGCATGCGTCCTTCATCCGATACCAAGACACAC ACCTATTTGTATCGCCAGTGGCAGAGTATTGGTGGCATTACCCATACCCATTCAACCTATGCCACCGCCTGGGCGCAAGC GCAGATAGCGATTCCCTGCTTAGGCACGACACAAGCCGATTATGTGTACGGTGAAATCCCATGCACAGCAGTGATGCGAA GCGATCAGATCAGCCGCGACTATGAAGAAGAAACCGGCGTGCAGATCCTCGATTGTTTCGCCGACCGAGATCCCAACGAG TCGCCCATGGTGATAGTGGCAGGCCATGCACCGTTCACTTGGGGCGCGAATGCGGCTAAATCTGTGTACCACGCCGTGTT GCTCGAAGAAATCGCTCGGATGGCGTATCTCACCAAAACTTTATCACCAGGCATTAGTCAGTTAAAACAAGAGCTTATTG ATAAGCATTATTTGCGTAAGCATGGAAAAGACGCTTATTACGGCCAAAGCAAGTAA Protein sequence : MSFLELKREVYEANMELEKRKLVTYTFGNVSQIDRQLGVIGIKPSGVPYEDLKVEDIVIVDLENQIVEGRMRPSSDTKTH TYLYRQWQSIGGITHTHSTYATAWAQAQIAIPCLGTTQADYVYGEIPCTAVMRSDQISRDYEEETGVQILDCFADRDPNE SPMVIVAGHAPFTWGANAAKSVYHAVLLEEIARMAYLTKTLSPGISQLKQELIDKHYLRKHGKDAYYGQSK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| araD | YP_281517.1 | L-ribulose-5-phosphate 4-epimerase | Not tested | Not named | Protein | 1e-51 | 49 |
