|
Name : Shewmr4_1967 (Shewmr4_1967) Accession : YP_734097.1 Strain : Shewanella sp. MR-4 Genome accession: NC_008321 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 2343802 - 2345088 bp Length : 1287 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGTTAGATCCTAAATTTTTGCGCAACGAATTAGCAGTTACCGCTGAGCGATTAGCTACCCGTGGTTTTATTTTAGATGT CGCTCATCTCACTCAATTAGAAGAAAAACGTAAGTCACTGCAAGTGGCGACTGAAGAGTTACAAGCTTCGCGTAATGCTA TTTCCAAGTCCATCGGACAAGCAAAAGCCCGCGGCGAAGATGTGGATGCCATCATGGCGCAGGTTGGCGATTTAGGTGCG CAATTAGATGCGAAGAAAGTCGAGCTGGCTGCGGTACTTGAAGAAGTGAACGCGATTGCCATGTCGATGCCAAACCTGCC GGATGAGTCTGCGCCTATAGGTGCTGACGAGACTGAAAACGTTGAAATCCGTCGTTGGGGCACACCACGCAGCTTCGATT TCCCTGTTAAAGATCATATCGACTTAGGTGAAGGCCTAAACGGTTTAGATTTTAAGAGCGCCGTGAAAATCACTGGCTCA CGCTTTATCGTGATGAAAGGCCAAATCGCCCGTTTAAACCGCGCATTAGGTCAGTTCATGTTAGATCTGCACACTACTGA GCACGGTTATACCGAAGCTTACGTGCCATTACTGGTTAACGAAGCAAGCTTACTGGGTACAGGCCAATTGCCTAAGTTTG GTGAAGACTTGTTCCACACTAAACCTGCGACCGAAGAAGGCCAAGGTTTAAGCCTGATCCCAACCGCAGAAGTGCCATTA ACGAACTTAGTGCGTGACAGCATTGTCGATGAAGACGAATTACCGATTAAGTTAACCGCGCATACCGCCTGTTTCCGCAG TGAAGCTGGCTCATACGGTAAAGATACCCGTGGTCTTATCCGTCAGCACCAATTCGATAAAGTGGAATTAGTGCAACTGG TTAAGCCTGAAGACTCAATGGCGGCGCTCGAAGCACTAACGGGCCACGCTGAAACCGTACTGCAACGCCTCGGTCTGCCA TACCGCACTGTGATCCTGTGTACCGGTGACATGGGCTTTGGTTCAAGCAAAACCTACGATATCGAAGTGTGGTTACCAGG CCAAAACACTTACCGCGAGATTTCTTCATGTTCAAACATGAAAGACTTCCAAGCCCGTCGTATGCAAGCCCGTTACCGCG TTAAGGCCGATAACAAGCCAGCCTTGCTGCACACCTTAAACGGCTCAGGCCTAGCGGTAGGTCGTACGTTAGTTGCGATT TTAGAAAACTATCAAAATGCCGATGGTAGCGTGACCATTCCAGAAGCTCTGCGTCCATACATGGGCGGACTGACTCAGAT CGGTTAA Protein sequence : MLDPKFLRNELAVTAERLATRGFILDVAHLTQLEEKRKSLQVATEELQASRNAISKSIGQAKARGEDVDAIMAQVGDLGA QLDAKKVELAAVLEEVNAIAMSMPNLPDESAPIGADETENVEIRRWGTPRSFDFPVKDHIDLGEGLNGLDFKSAVKITGS RFIVMKGQIARLNRALGQFMLDLHTTEHGYTEAYVPLLVNEASLLGTGQLPKFGEDLFHTKPATEEGQGLSLIPTAEVPL TNLVRDSIVDEDELPIKLTAHTACFRSEAGSYGKDTRGLIRQHQFDKVELVQLVKPEDSMAALEALTGHAETVLQRLGLP YRTVILCTGDMGFGSSKTYDIEVWLPGQNTYREISSCSNMKDFQARRMQARYRVKADNKPALLHTLNGSGLAVGRTLVAI LENYQNADGSVTIPEALRPYMGGLTQIG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 6e-111 | 57 |
