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Name : Shewmr4_0156 (Shewmr4_0156) Accession : YP_732294.1 Strain : Shewanella sp. MR-4 Genome accession: NC_008321 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 177691 - 179793 bp Length : 2103 bp Strand : + Note : TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: son:SO0166 general secretion pathway protein D DNA sequence : ATGAATAACAAACGGATTCGACGCAAACTGATTGCTGGAGTTGTGGCTGGCGCCACTATGCTGACCTCGCAATTTGTTTG GTCTGAACAATATGCGGCCAACTTTAAAGGCACTGATATCCAAGAGTTTATCAACATTGTTGGTAAAAACCTGAATAAAA CCATCATTGTTGACCCGACCATTCGCGGCAAGATCAACGTGCGCAGTTATGATCTGCTCAACGATGAGCAGTATTACCAA TTCTTCCTCAACGTGCTGCAAGTGTACGGTTATGCCATCGTCGAGATGGAAAACAACGTCATTAAAGTCATTAAAGACAA AGATGCTAAAACCGCGGCGATTCGTGTTGCTAACGACAACGACCCAGGTTTAGGTGATGAAATGGTCACCCGCATCGTGG CGCTGTACAACACCGAAGCCAAGCAATTAGCACCGTTATTACGTCAGTTAAACGATAACGCCGGTGGCGGTAACGTAGTG AACTACGACCCATCGAACGTACTGATGTTGTCAGGCCGCGCCGCTGTGGTGAACAAGTTAGTTGAAATCGTTCGCCGTGT AGATAAGCAGGGCGATACCTCGGTACAAGTGGTGCCGCTCGAATACGCCTCAGCCGGTGAAATGGTGCGAATTATCGATA CTCTTTACCGCGCGACAGCTAACCAAGCGCAGCTCCCAGGACAAGCGCCCAAGGTCGTTGCCGACGAGCGCATTAACGCC GTAGTGGTCAGTGGTGACGAAAAGAGCCGCCAACGCGTGGTTGAGCTTATCCATCGCCTCGATGCCGAGCAGGCCAGCAC GGGCAATACTAAGGTACGTTATTTACGTTATGCCAAGGCTGAAGATTTAGTCGAGGTGCTGACCGGATTTGCGCAAAAGC TTGAGGGTGAAAAAGATCCAAGCGCCCAGGCTGGCGGTAAACGTCGTAATGAAATCAATATTATGGCCCACACGGATACT AACGCCTTAGTGATCAGCGCCGAGCCAGATCAAATGCGCACTATCGAGAGTGTGATTAACCAACTCGATATTCGCCGCGC CCAAGTATTAGTCGAAGCCATTATCGTGGAAGTCGCCGAAGGCGATAACGTCGGTTTTGGTGTGCAATGGGCCGCTAAAG CGGGCGGTGGTACTCAGTTCAATAACTTAGGCCCAACCATTGGTGAAATTGGCGCCGGTATTTGGCAGGCACAGGGAGAA GATGGGACAACTGTTTGTACCGAGAATGGCACTTGTACTGAAAACCCAGATTCTAGAGGTGATGTGACTTTACTTGCCCA AGCCTTAGGTAAAGTGAATGGTATGGCTTGGGGCGTGGCCATGGGCGACTTTGGCGCCTTAATACAAGCAGTATCGGCCG ATACCAACTCAAACGTACTGGCGACACCTTCGATTACAACTCTAGATAACCAAGAAGCCTCGTTTATCGTCGGTGACGAA GTGCCGATTCTGACCGGTTCTACCGCCAGCTCAAACAACAGTAACCCATTCCAAACCGTTGAACGTAAAGAGGTTGGGGT GAAGTTAAAAGTTGTGCCTCAGATCAACGAAGGCAACGCGGTTAAGCTCGCCATTGAGCAAGAAGTCTCGGGTGTAAACG GTAATACGGGTGTAGATATCTCCTTCGCGACTCGCCGTTTAACCACCACTGTGATGGCTGACTCAGGGCAAATCGTGGTA CTCGGTGGTTTGATTAACGAAGAAGTCCAAGAAAGTGTCCAGAAAGTACCATTCCTCGGTGATATTCCGGTACTCGGACA CTTATTCAAATCTTCTTCCAGTAAGAAGACCAAAAAGAACCTGATGATCTTCATCAAGCCCACCATTATCCGTGATGGTG TGACTATGGAAGGCATCGCAGGCCGTAAATACAACTATTTCAGAGCATTACAACTTGAGCAGCAAGAGCGCGGCGTGAAC CTAATGCCAAATACTCAAGTGCCAATTCTGGAAGAATGGAATCAATCTGAATATTTGCCGCCCGAAGTGAACGACATTTT AGATCGTTACAAAGAAGGCAAAGGGTTAGACACCCAGATGCGTGAAACGGACTCGACCCTCAAGTCGCTGGATGAAAACA AGAACAAAGATAAAACACAATGA Protein sequence : MNNKRIRRKLIAGVVAGATMLTSQFVWSEQYAANFKGTDIQEFINIVGKNLNKTIIVDPTIRGKINVRSYDLLNDEQYYQ FFLNVLQVYGYAIVEMENNVIKVIKDKDAKTAAIRVANDNDPGLGDEMVTRIVALYNTEAKQLAPLLRQLNDNAGGGNVV NYDPSNVLMLSGRAAVVNKLVEIVRRVDKQGDTSVQVVPLEYASAGEMVRIIDTLYRATANQAQLPGQAPKVVADERINA VVVSGDEKSRQRVVELIHRLDAEQASTGNTKVRYLRYAKAEDLVEVLTGFAQKLEGEKDPSAQAGGKRRNEINIMAHTDT NALVISAEPDQMRTIESVINQLDIRRAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGIWQAQGE DGTTVCTENGTCTENPDSRGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVSADTNSNVLATPSITTLDNQEASFIVGDE VPILTGSTASSNNSNPFQTVERKEVGVKLKVVPQINEGNAVKLAIEQEVSGVNGNTGVDISFATRRLTTTVMADSGQIVV LGGLINEEVQESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIRDGVTMEGIAGRKYNYFRALQLEQQERGVN LMPNTQVPILEEWNQSEYLPPEVNDILDRYKEGKGLDTQMRETDSTLKSLDENKNKDKTQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-150 | 53 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 5e-158 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shewmr4_0156 | YP_732294.1 | general secretion pathway protein D | VFG2047 | Protein | 1e-148 | 53 |
