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Name : Shewmr4_1359 (Shewmr4_1359) Accession : YP_733494.1 Strain : Shewanella sp. MR-4 Genome accession: NC_008321 Putative virulence/resistance : Virulence Product : two component, sigma54 specific, Fis family transcriptional regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2204 EC number : - Position : 1580499 - 1581878 bp Length : 1380 bp Strand : - Note : PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO3138 C4-dicarboxylate transport transcriptiona DNA sequence : ATGAGTCTGCCCAATTCAATTCAAGACTATAGCGTACTGATCATCGACGATGAGCCCCATATAGGCACAGTGCTCGTGCA GCTGTTTGAGTTGGAAGGCATTAAAGCCTTCGCCACTACCGATCCCAAAGGGATCGCCAAATTACTCGACAGAGACTGGG CCGGAGTAGTGATTTCCGATGTGAATATGCCGCAGCTCGACGGCATCAGTTTGATGCAGCAAATTCGTCAGCAGGACCCC GATTTACCCGTGGTGCTGCTCACCGGCTTTGGCGATATCGCCATGGCGGTCAATGCGTTAAAACAAGGGGCCTACGATTT TCTCGAAAAACCCTTTAATAACGAACACATGCTAGACGTGGTGAAGCGCGCCTTAGATAAACGCAGCCTCACCCTAGAGA ACCGTAAATTAAAGAAAGAGTTAGAAAGCCATAACGTACCAGGCCCAAGGATATTAGGCCACAGCGTCGGCATTTTGCGC ATGCGTCACATCATAGACCAAGTGATCGACACCCCCGCCGATGTGCTTATTGAAGGTGAAACCGGTACGGGCAAGGAATT GGTCGCCCGCTATCTGCACGACCACAGCAGTCGCAATCAAGCCAACTTTGTGGCAATTAACTGCGGCGCGATTCCCGAAA ACTTGATTGAGAGCGAGCTATTTGGCGCCGAAGCTGGCGCCTTTACCGGTGTCGATAAACTGCGTGTCGGCAAGTTTGAA TACGCCAATGGCGGCACACTCTTTTTAGATGAAATCGAAAGCACGCCGCTGTCGTTACAGGTCAAACTGCTGCGGGTGCT CGAAGATCGTAAGGTCGAACGCCTAGGCTCCAATAAAAGCATTCATCTGGATATTCGGGTAATTGCCGCCACTAAGGTGG ATTTAAAGTCCCTGTGCGACACCGGAGAGTTTCGCCAAGACCTGCTCTATCGCTTAAATCTGGTGACTGTGCCCATTCCA CCACTCAGAGATCGCCGCGAAGATATTCCCTTATTATTCTTACATTTTGCCCGTATGGCCTCGGCGCGCTATCACAAGGC CTTAATTGCCCTCAATGCCGAGCAGAATGCTATCCTCAGCTCCCACGACTGGCCGGGTAATGTGCGTGAGCTGCGAAATC TGGCCGAACGTTATGTGTTACTCGGTGGCGAAGCCGCCTTCGCAGGCACCTTAGGCAACGCGCCCAGTCTGCATACCAGT ATGTCATTGCTGCAACGGGTCGAGTTTTTTGAGCGGGTATTGATTGAAGAAGCCTTAAGCCATAACAAGGGAAGCATTAA GCAGACAATGGAGCAACTCGAACTGCCCCGCAAAACCTTATACGACAAGATGCGTAAATACGATTTAGACCGCAAGCAAT ATATCAACGCCGACGAATAA Protein sequence : MSLPNSIQDYSVLIIDDEPHIGTVLVQLFELEGIKAFATTDPKGIAKLLDRDWAGVVISDVNMPQLDGISLMQQIRQQDP DLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVVKRALDKRSLTLENRKLKKELESHNVPGPRILGHSVGILR MRHIIDQVIDTPADVLIEGETGTGKELVARYLHDHSSRNQANFVAINCGAIPENLIESELFGAEAGAFTGVDKLRVGKFE YANGGTLFLDEIESTPLSLQVKLLRVLEDRKVERLGSNKSIHLDIRVIAATKVDLKSLCDTGEFRQDLLYRLNLVTVPIP PLRDRREDIPLLFLHFARMASARYHKALIALNAEQNAILSSHDWPGNVRELRNLAERYVLLGGEAAFAGTLGNAPSLHTS MSLLQRVEFFERVLIEEALSHNKGSIKQTMEQLELPRKTLYDKMRKYDLDRKQYINADE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 8e-50 | 41 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 5e-52 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Shewmr4_1359 | YP_733494.1 | two component, sigma54 specific, Fis family transcriptional regulator | VFG1249 | Protein | 1e-63 | 43 |
