Gene Information

Name : sync_2597 (sync_2597)
Accession : YP_731785.1
Strain : Synechococcus sp. CC9311
Genome accession: NC_008319
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2277009 - 2277755 bp
Length : 747 bp
Strand : +
Note : identified by match to protein family HMM PF00072; match to protein family HMM PF00486

DNA sequence : 
ATGACGGCCACAGCCGCCAGCAAGGAAACCATTCTCGTTGTCGACGACGAGGCCAGTATTAGACGCATTCTGGAAACCCG
CCTGTCGATGATTGGTTACAACGTTGTAACCGCCTGCGACGGCACTGAAGCTCTCGAAAGCTTTGAACAGTGCAATCCAG
ATCTGGTGGTCTTGGACGTGATGATGCCAAAGCTTGACGGCTACGGCGTTTGCCAAGAATTACGCAAGGAGTCGGATGTT
CCGATCGTGATGCTCACCGCCTTGGGTGATGTTGCAGACAGGATTACCGGGCTTGAGCTCGGTGCTGACGACTATGTCGT
TAAACCGTTTAGTCCCAAAGAGCTTGAAGCAAGAATTCGCTGCGTTCTGCGCCGCGTTGAGAAAGAACAGGTCGCTGGAA
TTCCCAACTCTGGGGTGATTCAAGTCGCAGATCTACGCATCGACACCAATAAGCGTCAGGTGTTCCGAGCCGATGAACGG
ATCCGCCTCACCGGAATGGAGTTCAGCCTCCTGGAGCTGCTCGTGGGTCGCTCTGGAGAACCCTTCAGCCGCGGTGAGAT
CCTGAAGGATGTGTGGGGATATACACCTGAACGTCACGTGGACACCAGGGTCGTGGATGTTCATATCTCACGGCTTCGCT
CCAAACTAGAAGACGACCCGGCCAATCCCGAGCTGATCCTCACGGCTCGAGGAACCGGTTACTTGTTCCAGCGCATCATC
GATTCCGTTGCACCCGAAGGATCCTGA

Protein sequence : 
MTATAASKETILVVDDEASIRRILETRLSMIGYNVVTACDGTEALESFEQCNPDLVVLDVMMPKLDGYGVCQELRKESDV
PIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKEQVAGIPNSGVIQVADLRIDTNKRQVFRADER
IRLTGMEFSLLELLVGRSGEPFSRGEILKDVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQRII
DSVAPEGS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-31 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sync_2597 YP_731785.1 DNA-binding response regulator NC_002952.2859905.p0 Protein 4e-46 49
sync_2597 YP_731785.1 DNA-binding response regulator NC_002745.1124361.p0 Protein 6e-46 49
sync_2597 YP_731785.1 DNA-binding response regulator NC_009782.5559369.p0 Protein 6e-46 49
sync_2597 YP_731785.1 DNA-binding response regulator NC_002951.3237708.p0 Protein 6e-46 49
sync_2597 YP_731785.1 DNA-binding response regulator NC_007622.3794472.p0 Protein 5e-46 49
sync_2597 YP_731785.1 DNA-binding response regulator NC_002758.1121668.p0 Protein 6e-46 49
sync_2597 YP_731785.1 DNA-binding response regulator NC_009641.5332272.p0 Protein 6e-46 49
sync_2597 YP_731785.1 DNA-binding response regulator NC_013450.8614421.p0 Protein 6e-46 49
sync_2597 YP_731785.1 DNA-binding response regulator NC_007793.3914279.p0 Protein 6e-46 49
sync_2597 YP_731785.1 DNA-binding response regulator BAC0125 Protein 9e-39 48
sync_2597 YP_731785.1 DNA-binding response regulator NC_003923.1003749.p0 Protein 8e-46 48
sync_2597 YP_731785.1 DNA-binding response regulator AE000516.2.gene3505. Protein 1e-40 46
sync_2597 YP_731785.1 DNA-binding response regulator NC_012469.1.7685629. Protein 3e-43 46
sync_2597 YP_731785.1 DNA-binding response regulator HE999704.1.gene2815. Protein 2e-40 46
sync_2597 YP_731785.1 DNA-binding response regulator BAC0083 Protein 6e-35 44
sync_2597 YP_731785.1 DNA-binding response regulator BAC0197 Protein 1e-34 44
sync_2597 YP_731785.1 DNA-binding response regulator BAC0638 Protein 6e-28 43
sync_2597 YP_731785.1 DNA-binding response regulator CP000034.1.gene3671. Protein 7e-38 42
sync_2597 YP_731785.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 3e-36 41
sync_2597 YP_731785.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 3e-36 41
sync_2597 YP_731785.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 3e-36 41
sync_2597 YP_731785.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 3e-36 41
sync_2597 YP_731785.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 3e-36 41
sync_2597 YP_731785.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 3e-36 41
sync_2597 YP_731785.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 3e-36 41
sync_2597 YP_731785.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 3e-36 41
sync_2597 YP_731785.1 DNA-binding response regulator BAC0308 Protein 4e-35 41
sync_2597 YP_731785.1 DNA-binding response regulator CP004022.1.gene3215. Protein 3e-33 41
sync_2597 YP_731785.1 DNA-binding response regulator CP001918.1.gene5135. Protein 3e-25 41
sync_2597 YP_731785.1 DNA-binding response regulator HE999704.1.gene1528. Protein 1e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sync_2597 YP_731785.1 DNA-binding response regulator VFG1390 Protein 2e-39 44
sync_2597 YP_731785.1 DNA-binding response regulator VFG1389 Protein 2e-31 43
sync_2597 YP_731785.1 DNA-binding response regulator VFG0596 Protein 8e-32 42