Gene Information

Name : sync_2112 (sync_2112)
Accession : YP_731314.1
Strain : Synechococcus sp. CC9311
Genome accession: NC_008319
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1870264 - 1870956 bp
Length : 693 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence : 
GTGGCTCAGCTCCGAGATGTCAGCAAGGTGTATGGATCTGGAGAAACGGAGGTCAAAGCACTCAATGGACTGGATCTGGA
TGTGCTTCGCGGTGACTATTTGGCTGTGATGGGTGCGAGTGGATCAGGAAAAAGCACAGCGATGAATGTTCTTGGCTGCT
TGGATAGACCAACCAGTGGCACCTATTGCCTCAACGGCAGTGCTGTTGAGCGGCTTCATGACGATTCGTTGGCAGATCTG
CGCAACAAGGAACTGGGTTTTGTGTTTCAGCAGTTCCATCTCCTTCCCCATGCGACAGCTCTAGAAAATGTGATGCTGCC
AATGATTTATGCCGGACTTCCCTCCGCGGAGCGCGAGCAAAGGGCTGTTGCAGCTCTTCAACAGGTTGGTCTTGGCAAAA
GAATGGAGAATTGTCCCAATCAACTGTCGGGTGGTCAGCAACAGCGGGTGGCCATTGCTAGAGCAATTATCAATAAGCCA
ACCCTCCTCCTCGCTGATGAGCCCACCGGTGCTTTGGATTCACGCACGACGAATGACGTTTTGAACTTGTTTGATGAATT
GCACTCTCAAGGAATCACGATTGTTCTCGTTACCCATGAAGACGATGTGGCCGCTCGTGCCCAGACTGTGATTCACTTTC
GCGACGGTAAGGTCGAGCGAGTGGCTCAAAACCGCGTGAACCCTATGCTTTAA

Protein sequence : 
MAQLRDVSKVYGSGETEVKALNGLDLDVLRGDYLAVMGASGSGKSTAMNVLGCLDRPTSGTYCLNGSAVERLHDDSLADL
RNKELGFVFQQFHLLPHATALENVMLPMIYAGLPSAEREQRAVAALQQVGLGKRMENCPNQLSGGQQQRVAIARAIINKP
TLLLADEPTGALDSRTTNDVLNLFDELHSQGITIVLVTHEDDVAARAQTVIHFRDGKVERVAQNRVNPML

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-32 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-33 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-33 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sync_2112 YP_731314.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 6e-50 50
sync_2112 YP_731314.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-46 49
sync_2112 YP_731314.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-37 41