Gene Information

Name : sync_1758 (sync_1758)
Accession : YP_730962.1
Strain : Synechococcus sp. CC9311
Genome accession: NC_008319
Putative virulence/resistance : Virulence
Product : cation ABC transporter cation-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 1597118 - 1598050 bp
Length : 933 bp
Strand : -
Note : identified by match to protein family HMM PF01297

DNA sequence : 
TTGCGCCAGATGACAACACTTGCAGTGGGCTTGCCTTTGGTTTTTGCATGTTCTAAGCAAGGTGATTTATCTAATAAATC
TGGTAATGGTTCTGATGATCGTCCAATTGTTTTGACAACATTTACGATCCTTGCTGATATGGCTCGTCAGGTGGCTGGTG
ATCGTTTGCAAGTGAAGTCAATTACGAAGCCGGGTGCAGAAATTCATGGATATGAGCCTTCTCCTAAGGATTTAGAACAA
GCATCAGGAGCAGATTTAATCGTTGAAAATGGATTGGGATTAGAACTTTGGGCTCGTCGCTTTGTTCAATCAGCTGGAGA
CGTGCCCACTGTCACTCTCACCGAGGGGATGCAGCCATTGCTCATTGAGGGGGATGTGTATGCCGGAAAGCCCAATCCCC
ATGCCTGGATGTCACCTTTGCGGGCTCAGGGATATGTGGATCAACTCGTCGATGCCTTTTCTGACCTCGATCCAGAGGGG
TCTCAGATTTATCGAGACAATGGCAAACGCTACAAGTTCCAATTGAAAAATTTGGATACCGAGTTGCGAAACCTCCTCGC
TGTCATTCCCAAAAAACAGCGAGTTTTGGTCAGCTGTGAAGGGGCATTTTCCTATTTGGCTCAAGATTATGGATTTGATG
AGGCCTATTTATGGCCGGTCAATGCTGAAAGCCAGATCACTCCAAGACGCATGGCTCGGTTGATTGAGCGTGTGAAAAGA
GATCAGGTTCCTGCGGTGTTTTGTGAAACCACGGTGAGTGATAAAGCCCAGCGAGAGGTGGCTCGCGCTTCAGGCGCTCG
TTTTGGTGGCAATTTCTATGTGGACTCTCTATCAAAACGCAACGGTCCTGCACCAACTCTGCTCGACCTTCAACGCCACA
ATGTGAAACTTCTTAGGCAGGGGTTGGCTGCTTCCTCCGAAAAGTCCTCATGA

Protein sequence : 
MRQMTTLAVGLPLVFACSKQGDLSNKSGNGSDDRPIVLTTFTILADMARQVAGDRLQVKSITKPGAEIHGYEPSPKDLEQ
ASGADLIVENGLGLELWARRFVQSAGDVPTVTLTEGMQPLLIEGDVYAGKPNPHAWMSPLRAQGYVDQLVDAFSDLDPEG
SQIYRDNGKRYKFQLKNLDTELRNLLAVIPKKQRVLVSCEGAFSYLAQDYGFDEAYLWPVNAESQITPRRMARLIERVKR
DQVPAVFCETTVSDKAQREVARASGARFGGNFYVDSLSKRNGPAPTLLDLQRHNVKLLRQGLAASSEKSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 5e-66 51
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 5e-66 51
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 4e-66 51
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-66 51
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 5e-66 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sync_1758 YP_730962.1 cation ABC transporter cation-binding protein BAC0349 Protein 2e-66 51
sync_1758 YP_730962.1 cation ABC transporter cation-binding protein BAC0439 Protein 2e-61 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sync_1758 YP_730962.1 cation ABC transporter cation-binding protein VFG0525 Protein 2e-66 51