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Name : sync_1027 (sync_1027) Accession : YP_730239.1 Strain : Synechococcus sp. CC9311 Genome accession: NC_008319 Putative virulence/resistance : Virulence Product : Clp protease ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 931137 - 933719 bp Length : 2583 bp Strand : - Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724 DNA sequence : ATGTTCGAGCGGTTTACCGAGAAGGCCATCAAGGTGATCATGCTGGCCCAAGAAGAGGCACGTCGCCTTGGCCACAACTT TGTTGGTACAGAGCAGATTTTGCTGGGTCTGATCGGTGAAGGCACCGGCGTTGCTGCCAAGGTGCTCAAGTCGATGGGGG TCAATCTCAAAGATGCTCGGGTCGAAGTTGAAAAGATCATTGGCAGGGGATCAGGCTTCGTTGCCGTTGAAATTCCCTTC ACTCCCCGCGCCAAGCGTGTCCTTGAACTTTCTTTAGAAGAAGCCAGGCAGCTTGGGCACAACTACATCGGTACTGAGCA CCTCCTCCTGGGTCTCATTCGCGAAGGCGAAGGGGTTGCAGCACGAGTGCTCGAAAATCTTGGTGTGGACCTAGCCAAGG TGCGGACTCAGGTGATTCGCATGCTTGGCGAAACAGCTGAAGTGGGTGCTGGCGGTGGTGGTGGTTCTAAAGGATCTACC AAGACCCCAACACTGGACGAATTTGGCACCAACCTCACCCAACTAGCAACTGAAGCGAAACTGGACCCGGTGGTTGGACG TCACAAGGAGATTGATCGGGTTATTCAAATCCTCGGTCGACGCACGAAAAATAATCCTGTTCTCATTGGTGAGCCTGGTG TTGGCAAAACTGCTATTGCCGAGGGCTTGGCTCAACGGATTCAGCAGGGAGATATTCCAGACATCCTGGAAGAGAAGAGA GTTCTCACCCTTGACATCGGCTTGCTGGTTGCAGGCACGAAATACCGCGGTGAGTTTGAAGAACGGCTCAAAAAGATCAT GGAAGAGATCAAGTCAGCCGGCAATGTGATCTTGGTGATCGACGAAGTTCACACGTTGATTGGGGCTGGTGCAGCTGAAG GTGCGATTGATGCAGCAAATATTCTTAAGCCAGCGTTAGCGCGTGGAGAACTTCAATGCATCGGAGCAACAACGCTCGAT GAATACCGCAAACACATCGAACGCGATGCGGCTTTGGAGCGTCGTTTCCAACCCGTCACGGTGGGCGAACCCTCCATCGC AGACACCATTGAAATTCTGAGGGGACTACGTGAGCGTTATGAGCAGCACCATCGCCTCAAAATCACCGACGCGGCCCTCG ACGCAGCCGCAACATTGGGCGATCGCTACATCTCCGATCGCTTCCTTCCCGACAAGGCAATTGATCTGATTGATGAGGCT GGAAGTCGAGTTCGTCTGCTGAATTCCAAGCTGCCTCCTGCAGCGAAGGAAGTGGATAAAGAGCTACGCGCTGTCCAGAA GGACAAAGAAGATGCTGTTCGTGATCAAGATTTCAGTCGCGCAGGGGAACTACGCGACAAAGAAGTTGAGTTGCGCGAAA AGATTCGTACTTTGCTGCAAAGCAGCCGAGAAGAAGCTCCAGCCAACAGTGGTGATGCTGACCAAACCACCGACGCTGCT GCAGGAGAAGCCGCGGCCTCTGCTGCACCAGAAGGATCCACAGCACAACCACAACTCCTCACCACTCCCGTCGTTGACGA GGAAGACATCGCACACATTGTGGCCTCGTGGACTGGGGTCCCTGTTCAAAAGCTCACAGAAAGTGAATCCGTCAAATTGT TAAACATGGAGGAAACTCTCCACAAGCGCTTGATCGGACAAGACGAAGCCGTCAAGGCAGTCTCCAAAGCGATTCGTCGT GCTCGGGTTGGCTTGAAAAACCCTAATCGGCCGATTGCAAGCTTCATTTTCTCAGGTCCTACAGGTGTCGGCAAAACAGA ACTCACTAAGGCACTCGCCGCCTACTTCTTCGGTAGCGAAGAAGCGATGATCCGTCTTGACATGTCGGAATTCATGGAGA GGCATACGGTCAGCAAATTGATCGGTTCACCTCCGGGATACGTGGGATTTAATGAAGGAGGGCAGCTCACAGAAGCCGTT CGCCGTCGTCCATATACGGTTGTGCTCTTTGACGAGATTGAGAAGGCTCATCCAGATGTCTTCAATTTGCTATTGCAACT TTTAGAAGATGGTCGTCTGACAGATTCCAAAGGAAGAACCGTTGATTTCAAAAATACTTTGATCATCATGACGTCGAACA TCGGTTCGAAAGTGATTGAAAAAGGCGGCGGTGGTTTGGGCTTCGAATTCTCTGGTGAAAATGCCGAAGAGAATCAGTAC AACAGAATTAAATCACTGGTCAATGAGGAACTGAAGCAGTACTTCCGTCCTGAATTCCTTAATCGTCTAGATGAGATTAT TGTCTTCCGTCAACTCAATCGTGAAGAGGTGAAAGACATCGCGGAAATCATGCTTAAGGAAGTGTTTGCTCGAATTGGTG ACAAAGGGATTACTTTGACGGTCTCCAACGCTTTCAAAGAACGTCTTGTTGAGGAGGGATACAACCCTGCTTACGGAGCA AGGCCCCTGCGTCGTGCGGTGATGCGCCTGCTCGAGGACAGCCTGGCTGAGGAAGTCCTCACCGGCCGCATCAAAGAGGG AGATTCCGCTGAAGTGGACATCGACGACGATAAAAAAGTGGTTGTTCGCCACCTCAAAACCGCCACTCCAGTGACACCGC AATTGGCCAACGCTGGGGTCTGA Protein sequence : MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARVEVEKIIGRGSGFVAVEIPF TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLAKVRTQVIRMLGETAEVGAGGGGGSKGST KTPTLDEFGTNLTQLATEAKLDPVVGRHKEIDRVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIQQGDIPDILEEKR VLTLDIGLLVAGTKYRGEFEERLKKIMEEIKSAGNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLD EYRKHIERDAALERRFQPVTVGEPSIADTIEILRGLRERYEQHHRLKITDAALDAAATLGDRYISDRFLPDKAIDLIDEA GSRVRLLNSKLPPAAKEVDKELRAVQKDKEDAVRDQDFSRAGELRDKEVELREKIRTLLQSSREEAPANSGDADQTTDAA AGEAAASAAPEGSTAQPQLLTTPVVDEEDIAHIVASWTGVPVQKLTESESVKLLNMEETLHKRLIGQDEAVKAVSKAIRR ARVGLKNPNRPIASFIFSGPTGVGKTELTKALAAYFFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGFNEGGQLTEAV RRRPYTVVLFDEIEKAHPDVFNLLLQLLEDGRLTDSKGRTVDFKNTLIIMTSNIGSKVIEKGGGGLGFEFSGENAEENQY NRIKSLVNEELKQYFRPEFLNRLDEIIVFRQLNREEVKDIAEIMLKEVFARIGDKGITLTVSNAFKERLVEEGYNPAYGA RPLRRAVMRLLEDSLAEEVLTGRIKEGDSAEVDIDDDKKVVVRHLKTATPVTPQLANAGV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sync_1027 | YP_730239.1 | Clp protease ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 58 |
| sync_1027 | YP_730239.1 | Clp protease ATP-binding subunit ClpC | VFG0080 | Protein | 2e-142 | 51 |
