Gene Information

Name : H16_B1245 (H16_B1245)
Accession : YP_840765.1
Strain :
Genome accession: NC_008314
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1404798 - 1405472 bp
Length : 675 bp
Strand : -
Note : -

DNA sequence : 
ATGCGCATCTTGCTGGTCGAAGACGAAGCCGCCCTCGCCGCCCAGGTCCGCGCCAGCCTGGCCGAGGCCGGCTATGCCGT
CGACGTGGCCGCGGACGGCCTGGATGCCTGCCACCTGGGCGAGCAGGAGCCCTACGACGCCGTCATCCTGGACCTGGGCC
TGCCGCGGCTGGACGGCCTTTCGGTGCTGCGCCGCTGGCGCGCCGCGCAGGTCGGCGTGCCGGTGCTGATCCTGACCGCG
CGCGACAGCTGGACCGAGAAGGTCGAAGGCATCGATGCCGGCGCCGACGACTACCTGGCCAAGCCATTCCGCATGGAAGA
GCTGCTCGCGCGCATCCGCGCGCTGATCCGGCGCGCGCACGGCATGCCGGCGCCGGAGCTGCAATGCGGCCCGGTGCGGA
TGAATCCGCGCGCAGGCAAGGTCACCGTCGACGGCACGCCGGTGGCACTGACCTCGCATGAATTCCGCGTGCTGGACTAC
CTGATGCACCATCCCGGCGCCATCGTCAGCAAGACCGCGCTGACCGAGCATATCTATGCCCAGGACTTCGACCGCGACAG
CAACACCATCGAGGTCTTCGTCGGGCGGCTGCGCCGCAAGCTTGGCGTGGATGTCATCGAGACCGTGCGCGGCCAGGGCT
ACCGCATGCGGCCGCCGTCGCCACCGCAGCCCTAG

Protein sequence : 
MRILLVEDEAALAAQVRASLAEAGYAVDVAADGLDACHLGEQEPYDAVILDLGLPRLDGLSVLRRWRAAQVGVPVLILTA
RDSWTEKVEGIDAGADDYLAKPFRMEELLARIRALIRRAHGMPAPELQCGPVRMNPRAGKVTVDGTPVALTSHEFRVLDY
LMHHPGAIVSKTALTEHIYAQDFDRDSNTIEVFVGRLRRKLGVDVIETVRGQGYRMRPPSPPQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-26 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-25 43
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 5e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
H16_B1245 YP_840765.1 response regulator NC_002516.2.879194.p Protein 1e-34 46
H16_B1245 YP_840765.1 response regulator CP000647.1.gene1136. Protein 5e-35 45
H16_B1245 YP_840765.1 response regulator BAC0530 Protein 4e-35 45
H16_B1245 YP_840765.1 response regulator BAC0487 Protein 4e-29 44
H16_B1245 YP_840765.1 response regulator CP001918.1.gene2526. Protein 2e-33 44
H16_B1245 YP_840765.1 response regulator NC_002695.1.913289.p Protein 9e-33 43
H16_B1245 YP_840765.1 response regulator CP000034.1.gene2022. Protein 3e-34 43
H16_B1245 YP_840765.1 response regulator CP004022.1.gene1005. Protein 7e-36 43
H16_B1245 YP_840765.1 response regulator CP001138.1.gene1939. Protein 6e-35 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
H16_B1245 YP_840765.1 response regulator VFG0596 Protein 5e-27 44
H16_B1245 YP_840765.1 response regulator VFG1390 Protein 2e-27 43
H16_B1245 YP_840765.1 response regulator VFG0475 Protein 6e-35 43
H16_B1245 YP_840765.1 response regulator VFG0473 Protein 2e-24 43