Gene Information

Name : Tery_2437 (Tery_2437)
Accession : YP_722125.1
Strain : Trichodesmium erythraeum IMS101
Genome accession: NC_008312
Putative virulence/resistance : Virulence
Product : ATPase
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 3755804 - 3758281 bp
Length : 2478 bp
Strand : +
Note : PFAM: UvrB/UvrC protein AAA ATPase, central region Clp, N terminal ATPase associated with various cellular activities, AAA_5 ATPase AAA-2; SMART: ATPase; KEGG: tel:tll0307 ATP-dependent Clp protease regulatory subunit

DNA sequence :
ATGTTTGAACGCTTCACGGAAAAAGCAATCAAAGTGATAATGCTGGCCCAAGAAGAGGCTCGTCGCTTGGGACATAACTT
TGTAGGGACAGAACAAATCCTCCTGGGTCTCATTGGAGAGGGAACAGGGGTAGCAGCTAAAGTTCTCAAATCTATGGGTG
TTAATCTCAAAGATGCTCGAATTGAAGTAGAAAAGATAATTGGCCGTGGTTCGGGATTTGTGGCAGTAGAAATCCCATTT
ACTCCCAGAGCTAAAAGGGTTTTAGAGCTATCTTTGGAAGAAGCACGGCAATTAGGGCATAACTATATTGGCACAGAGCA
TCTACTATTGGGTTTAATTCGAGAAGGAGAAGGAGTAGCTGCAAGAGTTCTAGAAAATTTAGGAGTAGACCTCACTAAAG
TCCGGACTCAGGTGATTAGAATGTTAGGTGAAACAGCAGAAGTTACTGCTGGTGGTGGGGGTGGACGCACAAAAACTCCT
ACTCTTGATGAGTTTGGTTCAAATCTGACTCAAATGGCATCTGAAGGTAAATTAGACCCAGTGGTGGGAAGGCAAACAGA
AATAGAACGAGTAATTCAAATTTTAGGTCGTAGAACTAAGAATAATCCAGTTTTGATTGGGGAACCTGGTGTGGGAAAAA
CGGCGATCGCTGAGGGTTTGGCACAACGCATTGCTAATAATGATATACCGGATATTCTGGAAGAAAAGCGGGTGGTTACT
CTAGATATTGGTCTATTGGTTGCTGGTACTAAATACCGGGGTGAGTTTGAGGAACGTCTGAAGAAAATTATGGATGAAAT
TCGCTCTGCGGGTAATGTCATCCTAGTTATTGATGAGGTCCATACTCTGATTGGAGCTGGTGCTGCGGAAGGGGCCATTG
ATGCTGCGAATATTTTGAAGCCTGCTTTGGCTCGTGGGGAGTTACAGTGCATAGGGGCAACGACCCTCGATGAGTATCGG
AAACATATTGAAAGGGATGCAGCTCTGGAACGTCGTTTTCAACCAGTAATGGTGGGCGAACCTTCTGTTGATGAAACTAT
TGAGATCTTATATGGTTTAAGAGAACGTTACGAACAGCATCATAAATTAAAAATTTTGGATACTGCTTTGGAAGCTGCTG
CTAAGTTATCAGACCGTTATATTAGCGATCGCTATTTGCCGGATAAAGCTATTGACCTGATAGATGAAGCTGGTTCTCGT
GTCCGTTTGATTAATTCTCAACTACCTCCTGCAGCGAAGGAACTGGATAAGGAGTTGCGTAGCATTCTGAAAGAAAAGGA
TGAGGCGGTTCGTTCTCAGGATTTTGATAAGGCGGGAGAGTTGCGTGACCGGGAAATGGAAATCAAATCTGAAATTCGTT
CTCTTGCTCAAAATAAAAAGCTCGACTCTACTAATGAAGATGATTCTCCAATGGTGACTGAGGAGGATATTGCTCATATT
GTGGCAAGTTGGACTGGTGTTCCGGTGAATAAGTTAACTGAGTCTGAATCTGAGAAACTTCTGCACATGGAGGATACTCT
ACACCAACGTTTGATTGGTCAGGAGGAAGCTGTCAAGGCAGTGTCTCGTGCTATTCGTCGGGCAAGAGTGGGATTGAAAA
ACCCTAACCGACCTATTGCTAGTTTTGTTTTCTCTGGACCGACTGGGGTTGGTAAGACAGAACTGACTAAGGCGTTAGCT
GCATATTTCTTTGGTTCTGAGGAAGCGATGATCCGTTTGGATATGTCGGAATATATGGAACGTCATACTGTTTCTAAGTT
GATTGGTTCTCCTCCTGGTTATGTGGGTTATAATGAGGGTGGTCAGTTAACTGAGGCAGTTCGTCGTCGCCCTTATACTG
TGGTGCTATTTGATGAAATTGAAAAGGCACACCCTGATGTATTCAATATGCTGTTGCAAATTTTGGAAGATGGTCGCCTG
ACTGATGCGAAGGGTAGGACTGTTGATTTTAAGAATACCTTGATTATTATGACTTCTAATATCGGTTCTAAGGTCATTGA
GAAAGGTGGCGGTGGTCTTGGTTTTGAGTTCTCAGAAAATGAGGCTGATGCTCAGTATAACCGAATTCGCAATTTAGTGA
ATGAGGAGTTGAAACAGTATTTCCGTCCAGAGTTTCTTAACCGTTTGGATGAGATTATTGTGTTCCGTCAGTTGACTAAG
GATGAAGTTAAGGAAATTTCTGTTATTCTGCTCAAAGAAGTGTTTAGTAGGTTGACAGAGAAAGGTATTAAGTTAGAAAT
TACTGATCGTTTCCAGGAGCGGTTGGTTGAGGAAGGTTATAATCCTAGTTATGGGGCAAGACCTTTGCGTCGGGCAATTA
TGCGTTTGCTTGAGGATAGTTTGGCTGAGGAAATTCTGGCTGGCAAGATCAATGAGGGCGATACTGCTGTGGTTGATGTT
GGGGAAAGTGGTCAGATTATAGTTTCTAAGGGTGAAGAAAAAGAAAAACGAGAGTTGGTACCTCAAGGTGCTGAATAG

Protein sequence :
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF
TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLTKVRTQVIRMLGETAEVTAGGGGGRTKTP
TLDEFGSNLTQMASEGKLDPVVGRQTEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIANNDIPDILEEKRVVT
LDIGLLVAGTKYRGEFEERLKKIMDEIRSAGNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR
KHIERDAALERRFQPVMVGEPSVDETIEILYGLRERYEQHHKLKILDTALEAAAKLSDRYISDRYLPDKAIDLIDEAGSR
VRLINSQLPPAAKELDKELRSILKEKDEAVRSQDFDKAGELRDREMEIKSEIRSLAQNKKLDSTNEDDSPMVTEEDIAHI
VASWTGVPVNKLTESESEKLLHMEDTLHQRLIGQEEAVKAVSRAIRRARVGLKNPNRPIASFVFSGPTGVGKTELTKALA
AYFFGSEEAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMLLQILEDGRL
TDAKGRTVDFKNTLIIMTSNIGSKVIEKGGGGLGFEFSENEADAQYNRIRNLVNEELKQYFRPEFLNRLDEIIVFRQLTK
DEVKEISVILLKEVFSRLTEKGIKLEITDRFQERLVEEGYNPSYGARPLRRAIMRLLEDSLAEEILAGKINEGDTAVVDV
GESGQIIVSKGEEKEKRELVPQGAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tery_2437 YP_722125.1 ATPase VFG0079 Protein 0.0 61
Tery_2437 YP_722125.1 ATPase VFG0080 Protein 7e-154 53