Gene Information

Name : rph (Tery_2089)
Accession : YP_721802.1
Strain : Trichodesmium erythraeum IMS101
Genome accession: NC_008312
Putative virulence/resistance : Unknown
Product : ribonuclease PH
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG0689
EC number : 2.7.7.56
Position : 3258626 - 3259342 bp
Length : 717 bp
Strand : +
Note : RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs

DNA sequence :
ATGTCTTGGCAACGTCCAGATGGTAGAAAGTCAAACCAATTACGTCCTATTAGTTTTGAATTAGATTACACTAAATTTGC
CACCAGTTCTGTCTTAACCAAGTTTGGTGAGACAAAGGTACTCTGTAATGTCACTATCCAACCAGGAGTACCCAAATTTT
TGGCAGATACAGGCCAGGGTTGGTTAACTGCAGAATACAGAATGTTACCAGCTGCAACTTCCGAACGTCAACAACGGGAA
TTTATGAAATTATCTGGGCGAACTCAAGAAATTCAAAGGTTAATTGGACGCAGTTTAAGAGCTGCTCTAGATATGAATTT
ATTAGGGGAACGTACTATAATAGTAGATGCCGATGTTTTGCAAGCAGATGCAGGTACTCGCACTGTTTCTATTACTGGAG
GATTCGTGGCAGTAGCAAATGCTATTAGCAAGTTGATAGACCAGGGAAAGTTGGAGCGATCGCCTATTTTGCATCAAGTT
GCTGCTGTATCAGTAGGGTTATTAGAAAAAGAACCTTATTTAGATTTGAATTATCCTGAAGATGTCGCCGCAGAAATTGA
TTTTAACGTGGTGATGAATGACCAACCTGCTTTAATTGAGGTTCAGGGAACAGCAGAAATAGGTAGCTTTAGTCGTACTC
AACTTAATCAAATTTTAGATTTAGCAGAAGCAGGAATTAAAAAATTATTTGATGCCCAACGTCAAGTTATCTCTTGA

Protein sequence :
MSWQRPDGRKSNQLRPISFELDYTKFATSSVLTKFGETKVLCNVTIQPGVPKFLADTGQGWLTAEYRMLPAATSERQQRE
FMKLSGRTQEIQRLIGRSLRAALDMNLLGERTIIVDADVLQADAGTRTVSITGGFVAVANAISKLIDQGKLERSPILHQV
AAVSVGLLEKEPYLDLNYPEDVAAEIDFNVVMNDQPALIEVQGTAEIGSFSRTQLNQILDLAEAGIKKLFDAQRQVIS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
rph YP_001800860.1 ribonuclease PH Not tested Not named Protein 4e-55 50