Gene Information

Name : yfeD (HS_0325)
Accession : YP_718533.1
Strain : Haemophilus somnus 129PT
Genome accession: NC_008309
Putative virulence/resistance : Virulence
Product : chelated iron ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 322555 - 323397 bp
Length : 843 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTAATACGATTGTAGCGTGGTTTACCGAGCCCTTGGTGTATCCATTTATGCAACAAGCTATTATCATCGCACCTAT
CATTGGGGCAGTGTGTGCGATTTTATCGTGTTATTTAGTACTTAAAGGCTGGTCACTAATGGGTGATGCCATTTCTCACG
CTGTATTGCCGGGAATTATTCTTGCCTATGTATTAGCAATTCCGATTGCGATTGGGGCATTTTGGGCAGGCATCTTTTGT
GCAGTTTCCGTAGGTTATTTGAGAGATAACAGCCGAATCAAAGAAGACACAGTGATGGGAATTGTTTTTTCAGGAATGTT
TGCTTTCGGTTTGGTGCTGTTTTCCAAAGTGGAAACCGATCAACATCTAATGCACATTCTGTTCGGAAATATTCTAGGCA
TCATTAAGCAAGAATTTTGGCAAAGTATTGGCATTGCATTACTGGCATTTATCCTGATTGCCTTAAAACGCAAAGACTTG
TTGCTTTACTGTTTTGATCCAAGTCACACACGAGTTGCAGGACTTAACACCAAATTTTTACACTATGGTTTACTGGTAAT
CCTAGCGTTAGTCATCATCAGTGCAATGCAAGTTGTTGGCGTTATTTTAGTGGTGGCAATGCTCATTACACCTGGGATAA
CAGGCTATATTTTAGCTAAACGCTTTGATTATATGATGCTAATTGCCGTTTGCACAGCAGTATTCAGTGGTATTTTTGGC
GTATTGCTCAGTTTTCATTTCAACGTCGCCACAGGACCTTGTATTATCTTACTTCAAGCAAGCCTTTTTTTATGTGCCTT
AGGTTATAGTAAATATATCGCGATGCGTGTAGTTAATATTTAG

Protein sequence : 
MFNTIVAWFTEPLVYPFMQQAIIIAPIIGAVCAILSCYLVLKGWSLMGDAISHAVLPGIILAYVLAIPIAIGAFWAGIFC
AVSVGYLRDNSRIKEDTVMGIVFSGMFAFGLVLFSKVETDQHLMHILFGNILGIIKQEFWQSIGIALLAFILIALKRKDL
LLYCFDPSHTRVAGLNTKFLHYGLLVILALVIISAMQVVGVILVVAMLITPGITGYILAKRFDYMMLIAVCTAVFSGIFG
VLLSFHFNVATGPCIILLQASLFLCALGYSKYIAMRVVNI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-51 51
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-51 51
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-51 50
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-51 50
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-51 50
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 1e-36 42
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 2e-36 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_718533.1 chelated iron ABC transporter permease BAC0442 Protein 5e-68 62
yfeD YP_718533.1 chelated iron ABC transporter permease BAC0352 Protein 2e-51 51
yfeD YP_718533.1 chelated iron ABC transporter permease BAC0441 Protein 1e-31 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_718533.1 chelated iron ABC transporter permease VFG0528 Protein 1e-51 51