|
Name : dnaB (HS_1720) Accession : YP_719925.1 Strain : Haemophilus somnus 129PT Genome accession: NC_008309 Putative virulence/resistance : Unknown Product : replicative DNA helicase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0305 EC number : 3.6.1.- Position : 1953256 - 1954632 bp Length : 1377 bp Strand : + Note : - DNA sequence : ATGTGTAAAATGAAAAAATCCCCCATTGAGCTTTATTCACTTGAAGCAGAATATTCTGTCATTGGTGGGCTATTGATTAA TGCGGATCGCTTTGATGATGTGGCAATCATTCTTAATGCTGAAGATTTCTACACTATACAACATCGCTATATTTTTGAAA CTATCGCATCACTTGTTAACCAAAACAAAGCCGTCGATATGCTCACGGTGTCAGAATATTGCAAAGAAAAAGGCATGTTG GAAGAAGTCGGCGGACTAGCTTATTTAGCTGAAATAGCACATAACACGCCATCGGTTGCCAATATTGTGGCTTATGCTGA ACTTGTCAAACAGTATAGTCGGCAACGTCAATTTTTAGCCTTGGGACAGTTTATTTTAAGTGAAATGACGGAGCCTAAGA ATGCAGAAAAATTGGCAACGCTTGCAGAACAGATTGAACAGCGATATACGCAAATTTCGTTAAATCAAACAGATAAAAGT GCGGTGAAATTAGCAGACATTTTTTCGCAAATGATCGACAAGATGGAAAAATCCACCCTAAATGAGGATCCTGTTACAGG CACGCCATTGGGTATCCAACAAATTGATGAATTAACTACCGGCGGGCAAGCGGGAGAATTGATCATCATCGCCGCTCGTC CTGCGATGGGAAAAACCGCTCTTTCCCTTACGGCAACGGCAAGTATTTTGGATAAGATGACGGACCAGCCTGTATTTTAT TTCAGTCAGGAAATGCCCGCAGATCAACTTCTACAACGTTTTACGGCAATGAAATCAAGGGTAAGCCTGCAAAAGATTCG CCGAGCGACAGAGCTTAAGGTAGAAGATTGGAGCAAACTTTCCGACTCGGTGGGTCGTATCCAACGAGACTGGAACAAGC GTTTAATTATTGATGATGAAGGTGCATTAACGATCCCTCGATTACGTAGTAAAGTGCGTCAATATAGCCGACAATATGGC TTGCCTGCGGCGGTTTTCATTGATTATCTCCAATTAATGCGAGGTACCGGCAGAATAGAAAACCGCCACCTTGAAATCAC TCAAATTTCAGGGGCGTTGAAGGCGTTAGCCAAAGAGTTGGGGTGTCCTGTTTATGCTCTTTCACAGCTCAATCGTAGTT TAGAACAACGTACCAATAAACGCCCTGTCAATGCGGATTTACGTGAATCGGGCTCACTTGAGCAAGATGCTGATGTGATT TTGTTTATCTATCGTGATGAAGTCTATCACCCGGAAAGTGTAGATAGAGGGCTAGCTGAAATCATTATCGGCAAACAACG TAATGGACCATTAGGGAGTGTGAAATGCCGCTTTTATGGTGAGTTTAGTTTATTTGAAAATGAAATGAATTTAGGTAGAT ATCGCTATGAACACTAA Protein sequence : MCKMKKSPIELYSLEAEYSVIGGLLINADRFDDVAIILNAEDFYTIQHRYIFETIASLVNQNKAVDMLTVSEYCKEKGML EEVGGLAYLAEIAHNTPSVANIVAYAELVKQYSRQRQFLALGQFILSEMTEPKNAEKLATLAEQIEQRYTQISLNQTDKS AVKLADIFSQMIDKMEKSTLNEDPVTGTPLGIQQIDELTTGGQAGELIIIAARPAMGKTALSLTATASILDKMTDQPVFY FSQEMPADQLLQRFTAMKSRVSLQKIRRATELKVEDWSKLSDSVGRIQRDWNKRLIIDDEGALTIPRLRSKVRQYSRQYG LPAAVFIDYLQLMRGTGRIENRHLEITQISGALKALAKELGCPVYALSQLNRSLEQRTNKRPVNADLRESGSLEQDADVI LFIYRDEVYHPESVDRGLAEIIIGKQRNGPLGSVKCRFYGEFSLFENEMNLGRYRYEH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| dnaB1 | YP_005176258.1 | replicative DNA helicase | Not tested | ICEPmu1 | Protein | 3e-122 | 59 |
| PMI2640 | YP_002152342.1 | DNA helicase | Not tested | Not named | Protein | 4e-92 | 50 |
| api2 | CAF28476.1 | putative DNA binding protein with DNA-dependent ATPase activity | Not tested | YAPI | Protein | 8e-94 | 47 |
| dnaB2 | YP_001402701.1 | replicative DNA helicase | Not tested | YAPI | Protein | 2e-93 | 46 |
| unnamed | ABR13456.1 | replicative DNA helicase | Not tested | PAGI-5 | Protein | 2e-86 | 46 |
| STY4522 | NP_458617.1 | DNA helicase | Not tested | SPI-7 | Protein | 7e-87 | 46 |
| t4227 | NP_807829.1 | DNA helicase | Not tested | SPI-7 | Protein | 7e-87 | 46 |
| dnaB2 | YP_001007676.1 | putative DNA helicase | Not tested | YAPI | Protein | 7e-90 | 46 |
| dnaB | CAI36044.1 | replicative DNA helicase DnaB | Not tested | PPHGI-1 | Protein | 5e-76 | 44 |
