Gene Information

Name : ssb (HS_1129)
Accession : YP_719341.1
Strain : Haemophilus somnus 129PT
Genome accession: NC_008309
Putative virulence/resistance : Virulence
Product : single-stranded DNA-binding protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0629
EC number : -
Position : 1268836 - 1269300 bp
Length : 465 bp
Strand : +
Note : binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA

DNA sequence : 
ATGGCTGGAGTAAATAAAGTAATCATTGTTGGAAATCTTGGTAACGCTCCTGAAATTCGCACCATGCCAAACGGTGATGC
TGTTGCGAATATCAGTGTTGCAACAAGTGAAAGTTGGATTGATAAAAATACCAATGAACGCCGTGAAATTACAGAATGGC
ATCGCATCGTGTTTTATCGTCGTCAAGCAGAAGTGGCTGGAGAATATTTACGCAAAGGCTCAAAAGTTTATGTAGAAGGA
CGTTTAAGAACACGCAAATGGCAAGATCAAAATGGTCAAGATCGTTATACCACTGAAATTCAGGGCGATGTATTGCAAAT
GCTGGATAGTCGTTCCGATCGTGGACAAATGGGAGGATACGAACCTCAACAGCAACCAACCTACCAATCACATTCTCAAC
CTAAACCGAGCATTGCATCTCCATCACCGGTTGATGCTCCACTTGATGATGACATTCCATTTTAA

Protein sequence : 
MAGVNKVIIVGNLGNAPEIRTMPNGDAVANISVATSESWIDKNTNERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRGQMGGYEPQQQPTYQSHSQPKPSIASPSPVDAPLDDDIPF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssb1 YP_005176252.1 single-stranded DNA-binding protein Not tested ICEPmu1 Protein 2e-48 72
ssb AAF14810.1 single strand binding protein Not tested SPI-7 Protein 8e-33 54
ssB NP_458627.1 single strand binding protein Not tested SPI-7 Protein 1e-32 54
ssb NP_807839.1 single-stranded DNA-binding protein Not tested SPI-7 Protein 1e-32 54
ssb AAC26638.1 single-strand binding protein Not tested SPI-4 Protein 1e-26 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssb YP_719341.1 single-stranded DNA-binding protein VFG0576 Protein 2e-33 53